Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H04
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   0.78 
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    27   1.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   3.1  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    25   4.1  
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo...    25   5.5  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   7.2  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +1

Query: 19  EVETELLSTGIGKSTYSASTPTHRLTTD*DILINKRLRSYVRSLHLLRSEIGSKCLPS 192
           + + E L    GKST S S+P+H  ++  D+L      S + SL L  +    +CL S
Sbjct: 744 KTKVEKLKASEGKSTSSLSSPSHSTSSKRDLL------SGLESLSLKTNPKSEQCLES 795


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 387 TGIYSRTCRSDTNVIGPRSQKVHVHFVRICFLDXAQPV 274
           T  +SRT R +   + P+S  + V + RIC +D AQ V
Sbjct: 396 TESHSRTLRHEKRHVSPKSPLIDVCWWRIC-VDEAQMV 432


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
 Frame = -3

Query: 265 VIXGGTHNGXVNIDXXXDPHFLDTW-TAGTWNQF 167
           VI  G  N    I    D +F D W    TW+QF
Sbjct: 335 VIFEGVCNFSAEITRFADRNFYDDWWNCWTWDQF 368


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 359 PTPTLLAPEARKFTFILYAYASWIXHSQSRYGNSGRN 249
           PT  +++ E R+F     A  SW+ +  S   N+G +
Sbjct: 308 PTLMIISYEFRRFVDNFQALESWLVNKDSENQNAGES 344


>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
           Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 56  NQLIRRVRPHTGLRRIRIF*LTKDFGVTFGHFICFDLK 169
           ++LI + + H  LR +    +T    VT+GH++C+ L+
Sbjct: 276 SKLILKNKHHYILRSL----ITHSGSVTYGHYLCYRLQ 309


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 212 VTXXVNIHXPIVGSSXNYHTXTGCAXSKK 298
           +T   NIH PI+  S N      C   KK
Sbjct: 111 ITIPANIHIPIIEESDNASNNKLCTLFKK 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,311
Number of Sequences: 5004
Number of extensions: 32399
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)