Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H04
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0365 - 16818468-16818514,16818619-16821706,16822860-168229...    31   0.32 
11_01_0491 + 3789264-3789596,3789999-3790071,3790260-3790327,379...    29   1.7  

>11_04_0365 -
           16818468-16818514,16818619-16821706,16822860-16822919,
           16823595-16823954
          Length = 1184

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 38  YRQVSENQLIRRVRPHTGLRRIRIF 112
           Y  V  NQ++  +RPH GLRR+ I+
Sbjct: 754 YPIVPHNQILESLRPHEGLRRLAIY 778


>11_01_0491 +
           3789264-3789596,3789999-3790071,3790260-3790327,
           3790754-3790842,3791544-3791715,3791839-3791907,
           3792129-3792296,3792666-3792833,3792916-3793011
          Length = 411

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 298 AYAYKMNVNFLASGANNVGVGSAGSG 375
           AYA  M V FL  GA  V V  AG+G
Sbjct: 48  AYAASMLVVFLGGGAGGVAVAGAGAG 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,398
Number of Sequences: 37544
Number of extensions: 213144
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)