Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H04
         (387 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical pr...    34   0.040
AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical...    27   3.5  
AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear recep...    26   8.1  
AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear horm...    26   8.1  

>U39744-1|AAK18882.1|  471|Caenorhabditis elegans Hypothetical
           protein C03F11.1 protein.
          Length = 471

 Score = 33.9 bits (74), Expect = 0.040
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 323 FTFILYAYASWIXHSQSRYGNSGRNPQ 243
           FTFI +   SW+     RYG SG+NPQ
Sbjct: 270 FTFIFWIIMSWMFVQCERYGFSGKNPQ 296


>AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical
           protein F56D6.1 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 169 FQIEADEVTERNSEVFC*LKYPNPS*AGVWAYSPNKLIFRYLS 41
           F+  A ++T  ++  +C  +Y NP+ +   AY PNK    YL+
Sbjct: 32  FKFVAQQMTYSDARNWC--RYKNPAGSSYLAYVPNKDTSNYLA 72


>AF273836-1|AAG15184.1|  362|Caenorhabditis elegans nuclear receptor
           NHR-92 protein.
          Length = 362

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 211 GHXXCQYSXTHCGFLPELPYLDWLCXIQEAY 303
           G+  CQY  T   +LP   Y+D  C   E Y
Sbjct: 194 GYFACQYGRTDITYLPSGDYID--CVNPETY 222


>AC024776-15|AAK68482.2|  354|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 92 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 211 GHXXCQYSXTHCGFLPELPYLDWLCXIQEAY 303
           G+  CQY  T   +LP   Y+D  C   E Y
Sbjct: 186 GYFACQYGRTDITYLPSGDYID--CVNPETY 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,356,646
Number of Sequences: 27780
Number of extensions: 182177
Number of successful extensions: 443
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)