Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H04
         (387 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27920.1 68414.m03421 microtubule associated protein (MAP65/A...    32   0.12 
At3g04810.2 68416.m00521 protein kinase, putative similar to LST...    30   0.62 
At3g04810.1 68416.m00520 protein kinase, putative similar to LST...    30   0.62 
At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic ...    27   5.8  

>At1g27920.1 68414.m03421 microtubule associated protein
           (MAP65/ASE1) family protein low similarity to protein
           regulating cytokinesis 1 (PRC1) [Homo sapiens]
           GI:2865521; contains Pfam profile PF03999: Microtubule
           associated protein (MAP65/ASE1 family)
          Length = 592

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 25  ETELLSTGI-GKSTYSASTPTHRLTTD*DILINKRLRSYVRSLHLLRSE 168
           E + +S  I G+STY  ST   ++T D + L NK+L  Y   LH L  E
Sbjct: 165 EIQKISAEIAGRSTYEDST--RKITIDDNDLSNKKLEEYQNELHRLHDE 211


>At3g04810.2 68416.m00521 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 578

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 106 DILINKRLRSYVRSLHLLRSEIGSKCLPSKCPENE 210
           ++L    L+ Y++ +HL  ++ GS  LP++ PE+E
Sbjct: 251 ELLRQPLLQPYIQKIHLKVNDPGSNVLPAQWPESE 285


>At3g04810.1 68416.m00520 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 606

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 106 DILINKRLRSYVRSLHLLRSEIGSKCLPSKCPENE 210
           ++L    L+ Y++ +HL  ++ GS  LP++ PE+E
Sbjct: 251 ELLRQPLLQPYIQKIHLKVNDPGSNVLPAQWPESE 285


>At1g09130.1 68414.m01017 ATP-dependent Clp protease proteolytic
           subunit, putative similar to nClpP5 GI:5360595 from
           [Arabidopsis thaliana]
          Length = 330

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 259 ELPYLDWLCXIQEAYAYKMNVNFLASGANNVGVGSAGSGIY 381
           EL YL WL   +  Y Y  +          VG+ S G  IY
Sbjct: 149 ELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIY 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,810,556
Number of Sequences: 28952
Number of extensions: 169030
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)