Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H03
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    29   0.55 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.2  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   6.8  

>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 116 LLPVTNMSTVFYNLNHFRKYVHCLIHLNHAT 24
           ++PV   S    NL    K  HCLI +NH T
Sbjct: 32  VVPVPQSSLYLRNLTDETKNKHCLIKMNHGT 62


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 15   LKYCSMIEMNKTMYILSEMVQIVKYRT 95
            L YCS I ++K  Y + +MVQ++   T
Sbjct: 1022 LFYCSSIFISKEFYTVEQMVQVLSLAT 1048


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +1

Query: 454 ILNHKWNVVSSKLQTVSTQPTVKASILGLGLPQRSEENCHNCQAWQSGWRSQ 609
           IL   WN  S+ L T S    +    +   +   + +N H+  A Q  W S+
Sbjct: 525 ILGMSWNAKSTHLATASLDTNIHIYSVERPMKYIAMKNAHSLGATQVEWVSE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,028
Number of Sequences: 5004
Number of extensions: 47003
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)