Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H03
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ...    30   1.6  
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    29   3.6  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    29   3.6  
Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormo...    27   8.3  

>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
           protein M116.5 protein.
          Length = 1064

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 411 VIYCLILNRLINIFHSKSQMECSQFEITNRIHPTN 515
           +I+ +ILN  +++   +  +E SQ E TN  H TN
Sbjct: 133 LIWTIILNFQVSVIRQRLLLESSQHEQTNEKHTTN 167


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 274 SITSFIYIIILTVTLQNT*RTVQHCEKTNII 182
           + ++F Y+ +L++TL N      +CEKTN++
Sbjct: 881 TFSTFFYLPMLSLTLPNQSGICPYCEKTNLM 911


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 274 SITSFIYIIILTVTLQNT*RTVQHCEKTNII 182
           + ++F Y+ +L++TL N      +CEKTN++
Sbjct: 881 TFSTFFYLPMLSLTLPNQSGICPYCEKTNLM 911


>Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical
           protein C50F4.3 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -3

Query: 191 KYNLKAVPLKKVVLEIPKTFDL*N 120
           K+NLK + +K+ +  +PKTFDL N
Sbjct: 125 KFNLKNLRVKRQMEGLPKTFDLRN 148


>AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 83 protein.
          Length = 717

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +3

Query: 354 QPKN*LYCSIIT*MPPSSIVIYCLILNRLINIFHSKSQMECS-QFE 488
           +P+  L+CS+    P   IV    ++++ +NIF + S +  S QFE
Sbjct: 471 RPELILFCSLDRASPSRMIVDVSYLIDKAVNIFETPSYLPSSCQFE 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,364,686
Number of Sequences: 27780
Number of extensions: 251373
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)