Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H03
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr...    29   3.3  
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr...    29   3.3  
At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter, put...    28   5.8  
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con...    27   7.7  

>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 444

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 441 INIFHSKSQMECSQFEITNRIHPTNRKGV 527
           IN    +SQM+ SQF + NR  P N  G+
Sbjct: 340 INQMAMQSQMQLSQFPVMNRSAPQNHPGL 368


>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 442

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 441 INIFHSKSQMECSQFEITNRIHPTNRKGV 527
           IN    +SQM+ SQF + NR  P N  G+
Sbjct: 340 INQMAMQSQMQLSQFPVMNRSAPQNHPGL 368


>At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter,
           putative similar to SWISS-PROT:Q13183 renal
           sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
          Length = 540

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +2

Query: 188 ICLFTMLYCPLCILQC 235
           +C+F +L+C LC++ C
Sbjct: 273 LCIFVVLWCVLCVMYC 288


>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 534

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -3

Query: 410 YRTWWHLRYNRTV*LVFRLSALSVRQKKL*SYPGPLVKRVWSVKNKYN 267
           + T  HL+Y  T      +S+ S   K L SYP  L K +  +KNKYN
Sbjct: 362 FTTDQHLQYKLTNRSGDHISSESDGTKILWSYPEGLRKLLNYIKNKYN 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,210,385
Number of Sequences: 28952
Number of extensions: 223465
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)