Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H02
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    28   0.075
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.9  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   4.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 27.9 bits (59), Expect = 0.075
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 444 VEQKGNGEVMVTYHERMNAFLDYDCAIC 361
           V  + +G++MV Y +  + F D  C++C
Sbjct: 250 VSWRADGQIMVDYEDEFDEFGDSKCSLC 277


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 78  NYSNCDYNRKMS*NSKIISL 19
           NY+N +YN+K+   + II++
Sbjct: 105 NYNNNNYNKKLYYKNYIINI 124


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 142 FPTYTLQERSHSRYL 98
           FP Y +++RS  RYL
Sbjct: 295 FPVYQVEKRSPFRYL 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,288
Number of Sequences: 438
Number of extensions: 2784
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)