Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H02
(571 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 81 4e-16
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 77 8e-15
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 75 3e-14
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 74 6e-14
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 74 6e-14
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 73 1e-13
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 73 1e-13
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 73 1e-13
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 71 5e-13
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 70 1e-12
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 70 1e-12
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 66 2e-11
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 66 2e-11
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 55 3e-08
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 54 5e-08
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 54 5e-08
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 53 1e-07
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 52 3e-07
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 49 3e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 49 3e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 48 4e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 48 4e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 48 4e-06
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 46 1e-05
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 46 2e-05
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 45 4e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 44 5e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 44 5e-05
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 44 7e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 44 7e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 44 9e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 43 1e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 43 1e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 43 1e-04
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 43 1e-04
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 43 1e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 43 2e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 42 2e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 42 2e-04
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 42 3e-04
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 42 3e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 42 4e-04
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 4e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 5e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 41 7e-04
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 0.001
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 40 0.001
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 40 0.001
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.001
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 40 0.001
At2g47310.1 68415.m05906 flowering time control protein-related ... 40 0.002
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 39 0.002
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 39 0.002
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 39 0.002
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 39 0.003
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 39 0.003
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.003
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 39 0.003
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.004
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 38 0.004
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 38 0.004
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 38 0.005
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 38 0.005
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 38 0.005
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 38 0.005
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.005
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 37 0.008
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 37 0.008
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 37 0.011
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 37 0.011
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 37 0.011
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.014
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 36 0.014
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 36 0.014
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.014
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.014
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 36 0.014
At3g13700.1 68416.m01731 RNA-binding protein, putative similar t... 36 0.019
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 36 0.025
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 36 0.025
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 36 0.025
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 36 0.025
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 36 0.025
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 36 0.025
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 36 0.025
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.033
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 35 0.033
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 35 0.044
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.044
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.044
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 35 0.044
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 35 0.044
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 35 0.044
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 35 0.044
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 35 0.044
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 34 0.058
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 34 0.058
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 34 0.058
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 34 0.058
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 34 0.058
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 34 0.058
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 34 0.058
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 34 0.058
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 34 0.077
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 34 0.077
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.10
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.10
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.10
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 33 0.10
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 33 0.10
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 33 0.13
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 33 0.13
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 33 0.13
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 33 0.13
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 33 0.13
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 33 0.18
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 33 0.18
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.18
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.18
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.18
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.18
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.18
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 33 0.18
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 32 0.23
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 32 0.23
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 32 0.23
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 32 0.23
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 32 0.23
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 32 0.23
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 32 0.23
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 32 0.23
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 32 0.31
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 32 0.31
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.41
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.41
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 31 0.41
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 31 0.54
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 31 0.54
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 31 0.72
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 30 0.95
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 30 0.95
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 30 1.2
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 30 1.2
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 30 1.2
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 1.7
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 29 1.7
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 29 1.7
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 29 1.7
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 29 1.7
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 2.2
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 29 2.9
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 2.9
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 2.9
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 3.8
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 28 3.8
At1g60095.1 68414.m06771 jacalin lectin family protein contains ... 28 5.0
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 28 5.0
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 27 6.7
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 27 6.7
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 27 6.7
At3g16410.1 68416.m02079 jacalin lectin family protein similar t... 27 8.8
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 81.4 bits (192), Expect = 4e-16
Identities = 33/58 (56%), Positives = 45/58 (77%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
+VYVGNL ++ E+E F +G +R+VWVAR PPG+AF++FEDPRDA D++R LDG
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 77.0 bits (181), Expect = 8e-15
Identities = 32/58 (55%), Positives = 44/58 (75%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
+VYVGNL ++ E+E F +G IR+VWVAR PPG+AF++FED RDA D++R +DG
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 74.9 bits (176), Expect = 3e-14
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 302
+YVGNL + K E+E +F KYG I ++ + PPG+AFVEFEDPRDA+D++ G DG
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 303 RCCGTRIRVEM 335
G R+RVE+
Sbjct: 69 DFDGCRLRVEI 79
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 74.1 bits (174), Expect = 6e-14
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 296
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 74.1 bits (174), Expect = 6e-14
Identities = 31/57 (54%), Positives = 42/57 (73%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 296
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+EF+D RDA D++ LD
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALD 59
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 302
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 303 RCCGTRIRVEM 335
G R+RVE+
Sbjct: 69 DFDGHRLRVEL 79
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 302
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 303 RCCGTRIRVEM 335
G R+RVE+
Sbjct: 69 DFDGHRLRVEL 79
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 73.3 bits (172), Expect = 1e-13
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 302
VYVGNL + + E+E +FSKYG + + V PPG+AFVEF+D RDAED++ G DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 303 RCCGTRIRVEM 335
G R+RVE+
Sbjct: 69 DFDGHRLRVEL 79
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 70.9 bits (166), Expect = 5e-13
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW--VARNPPGFAFVEFEDPRDAEDSVRGL 293
S +YVGNL + ++EIE IF KYG I ++ V PP + FVEFE RDAED+++G
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 294 DGTRCCGTRIRVEM 335
DG G R+RVE+
Sbjct: 66 DGYNLDGCRLRVEL 79
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 302
+YVGNL + + E+E +FSKYG + + + PPG+AFVEFED RDA+D++ G DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 303 RCCGTRIRVEM 335
G +RVE+
Sbjct: 69 DFDGHHLRVEL 79
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 69.7 bits (163), Expect = 1e-12
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVEFEDPRDAEDSVRGLDGT 302
+YVGNL + + E+E +FSKYG + + + PPG+AFVEFED RDA+D++ G DG
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 303 RCCGTRIRVEM 335
G +RVE+
Sbjct: 69 DFDGHHLRVEL 79
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/80 (42%), Positives = 52/80 (65%)
Frame = +3
Query: 93 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 272
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF DPRDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDPRDA 57
Query: 273 EDSVRGLDGTRCCGTRIRVE 332
+D+ LDG G+RI VE
Sbjct: 58 DDARYYLDGRDFDGSRITVE 77
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 66.1 bits (154), Expect = 2e-11
Identities = 34/80 (42%), Positives = 52/80 (65%)
Frame = +3
Query: 93 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDA 272
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVEF DPRDA
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDPRDA 57
Query: 273 EDSVRGLDGTRCCGTRIRVE 332
+D+ LDG G+RI VE
Sbjct: 58 DDARHYLDGRDFDGSRITVE 77
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 55.2 bits (127), Expect = 3e-08
Identities = 26/58 (44%), Positives = 38/58 (65%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 302
VYVGN + ++E++FSK+G ++ V + G+AFV FED RDAED++R D T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS---GYAFVYFEDERDAEDAIRRTDNT 58
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 54.4 bits (125), Expect = 5e-08
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 308
V+ GN +A + ++E++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 309 --CGTRIRVE 332
G R+RVE
Sbjct: 61 GRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 54.4 bits (125), Expect = 5e-08
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 308
V+ GN +A + ++E++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEY 60
Query: 309 --CGTRIRVE 332
G R+RVE
Sbjct: 61 GRTGRRLRVE 70
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 308
V+ GN +A + ++E++F KYG + V + GFAFV ED RDAED++R LD
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKA---GFAFVYMEDERDAEDAIRALDRFEF 60
Query: 309 --CGTRIRVE 332
G R+RVE
Sbjct: 61 GRKGRRLRVE 70
Score = 35.1 bits (77), Expect = 0.033
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 153 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 332
N ++EK F YG I NV + RN FAF+++E DA ++ + ++ I VE
Sbjct: 108 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISVE 164
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 296
V+VGN + ++E++F KYG + V + G+AFV FED RDAED++R LD
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKS---GYAFVYFEDERDAEDAIRKLD 56
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 162 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 332
+++IEK F YG + NV + RN F+FV+FE DA ++ ++ + VE
Sbjct: 107 EHDIEKHFEPYGKVTNVRIRRN---FSFVQFETQEDATKALEATQRSKILDRVVSVE 160
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 281
++ +VYVGNL + + + FS YGN+ + V R+ GF FV + +AE +
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 282 VRGLDGTRCCGTRIRVEM 335
V G+DG G R+ V++
Sbjct: 61 VSGMDGKELNGRRVSVKL 78
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +3
Query: 105 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 269
R DL + V NL + + ++ K F ++G ++++++ R+ P GF FV+F DP D
Sbjct: 30 RSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPAD 89
Query: 270 AEDSVRGLDGTRCCGTRIRV 329
A D+ +DG G + V
Sbjct: 90 AADAKHHMDGYLLLGRELTV 109
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 48.0 bits (109), Expect = 4e-06
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAED 278
D KVYVGNL +K +E +FS+ G + + V+R P GF FV F D E
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 279 SVRGLDGTRCCGTRIRV 329
++ L+ + G +IRV
Sbjct: 234 AIVALNNSLLEGQKIRV 250
Score = 30.3 bits (65), Expect = 0.95
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 290
+VY+GN+ + ++ K+ ++G + V V + F F + DA V
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 291 LDGTRCCGTRIRVEM 335
L+G G I+V +
Sbjct: 137 LNGNTVEGREIKVNI 151
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 90 MMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEF 254
M R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F
Sbjct: 1 MKDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Query: 255 EDPRDAEDSVRGLDG 299
D R A+D+++ + G
Sbjct: 61 TDRRGADDAIKHMHG 75
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 48.0 bits (109), Expect = 4e-06
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 90 MMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFVEF 254
M R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+ F
Sbjct: 1 MKDRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITF 60
Query: 255 EDPRDAEDSVRGLDG 299
D R A+D+++ + G
Sbjct: 61 TDRRGADDAIKHMHG 75
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 47.6 bits (108), Expect = 6e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = +3
Query: 135 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 314
V NL + S ++E IF YG I+ + N FVEF D R A+ +++ L+ T G
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAG 285
Query: 315 TRIRVE 332
RI++E
Sbjct: 286 KRIKLE 291
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/67 (32%), Positives = 39/67 (58%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 308
++V NL ++ S E+ IFS YG IR V + ++EF D R A+ +++GL+G
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQVYIEFFDVRKAKVALQGLNGLEV 356
Query: 309 CGTRIRV 329
G ++++
Sbjct: 357 AGRQLKL 363
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Frame = +3
Query: 105 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 269
R+ DL + V NL + + ++ + F ++G ++++++ R+ P GF F++F DP D
Sbjct: 31 RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPAD 90
Query: 270 AEDSVRGLDGTRCCGTRIRV 329
A ++ +DG G + V
Sbjct: 91 AAEAKHQMDGYLLLGRELTV 110
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/65 (30%), Positives = 37/65 (56%)
Frame = +3
Query: 135 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 314
VGN+ +N YE++ +F ++G+I+ + A GF V + D R A+++ R L G
Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLLRG 280
Query: 315 TRIRV 329
T++ +
Sbjct: 281 TKLDI 285
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/65 (24%), Positives = 34/65 (52%)
Frame = +3
Query: 135 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCG 314
V NL ++ S E+ ++ YG ++ + + ++EF D R A ++ GL+G G
Sbjct: 306 VNNLDSSISNQELNRLVKSYGEVKEIRRTMHDNSQIYIEFFDVRAAAAALGGLNGLEVAG 365
Query: 315 TRIRV 329
++++
Sbjct: 366 KKLQL 370
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 44.4 bits (100), Expect = 5e-05
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Frame = +3
Query: 99 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPR 266
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+ G FV++
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262
Query: 267 DAEDSVRGLDGT 302
A ++ GL+GT
Sbjct: 263 TAMAAIDGLNGT 274
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 290
K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 291 L 293
L
Sbjct: 181 L 181
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 44.4 bits (100), Expect = 5e-05
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Frame = +3
Query: 99 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPR 266
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+ G FV++
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKE 262
Query: 267 DAEDSVRGLDGT 302
A ++ GL+GT
Sbjct: 263 TAMAAIDGLNGT 274
Score = 33.9 bits (74), Expect = 0.077
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 290
K++VG++ A++ EI F ++GN+ V + ++ G FV++ +DA+ ++R
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 291 L 293
L
Sbjct: 181 L 181
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 44.0 bits (99), Expect = 7e-05
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVEFEDPRDAEDSV 284
S VY+GN+ ++ ++ ++FS+ G I+ + + + P GF FV F D ED+V
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAV 92
Query: 285 RGLDGTRCCGTRIRVE 332
+ + GT IRV+
Sbjct: 93 KYISGTILDDRPIRVD 108
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 44.0 bits (99), Expect = 7e-05
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 296
VYV NL + E++ F +YG+I + V R+ G F FV FE+P DA +V L+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 297 GTR 305
G +
Sbjct: 287 GKK 289
Score = 33.5 bits (73), Expect = 0.10
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Frame = +3
Query: 123 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 287
C +YVG+L N + ++ F++ + +V V R+ G+ +V + + DAE +++
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 288 GLDGTRCCGTRIRV 329
L+ + G IR+
Sbjct: 106 KLNYSYLNGKMIRI 119
Score = 30.3 bits (65), Expect = 0.95
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 296
+YV NL + ++ ++F+++G I + V R+P G + FV F +A + ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 297 GTRCCGTRIRVEM 335
G G + V +
Sbjct: 390 GKMVGGKPLYVAL 402
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 43.6 bits (98), Expect = 9e-05
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 290
+VYVGNL +E +FS+ G + V + GF FV ++ ++ +++++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 291 LDGTRCCGTRIRV 329
LDG G +IRV
Sbjct: 265 LDGADLDGRQIRV 277
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 290
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 291 LDGTRCCGTRIRV 329
+G G +RV
Sbjct: 152 FNGYELDGRPLRV 164
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPG--FAFVEFEDPRDAEDSVRGLD 296
VYVG L + ++ + ++FS YG++ V + R+ G + FV F + R A+D++ +D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 297 GTRCCGTRIRV 329
G G +RV
Sbjct: 69 GKSIGGRAVRV 79
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 284
L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++E A ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 285 RGLDG 299
++G
Sbjct: 164 ESING 168
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 284
L K++VG L N S+ E++ +FSKYG I+++ + R G AF+++E A ++
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 285 RGLDG 299
++G
Sbjct: 164 ESING 168
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +3
Query: 141 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 320
N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G
Sbjct: 276 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 335
Query: 321 IRVEM 335
I++E+
Sbjct: 336 IKLEL 340
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +3
Query: 141 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 320
N+ T S E+ ++F YG IR + N F+E+ D RDAE +++ L+ + G
Sbjct: 289 NVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEIGGKC 348
Query: 321 IRVEM 335
I++E+
Sbjct: 349 IKLEL 353
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +3
Query: 105 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 269
R +D + ++YVGNL + +E++FS++G + + V + GF FV+ + +
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENE 260
Query: 270 AEDSVRGLDGTRCCGTRIRVEM 335
++ LDG G I+V +
Sbjct: 261 VNVAIAALDGQNLEGRAIKVNV 282
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 123 CKVYVGNLGTNA-SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
C V V NL ++ + ++ +FS YGNI + + RN P A V+ D AE +V L G
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKG 304
Query: 300 TRCCGTRIRV 329
G R+ V
Sbjct: 305 AMLFGKRLEV 314
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDS 281
+S +++V L + + ++FS +G I+ + R+ P GF F+ F+ DA +
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 282 VRGLDGTRCCGTRIRVEM 335
++ LDG G I VE+
Sbjct: 65 LKSLDGKIVDGRLIFVEV 82
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVAR---NPPGFAFVEFEDPRDAEDSV 284
S K++VG + + ++ + + FSKYG + + V R GFAFV F +A +++
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 285 RGLDGTRCCGTRIRV 329
+ LDG G RIRV
Sbjct: 93 Q-LDGQDLHGRRIRV 106
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPGFAFVEFEDPRDAEDSVRGLDG 299
+YV NL N + E+ IF KYG IR + + + G AFV +ED DA+++V L G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 105 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 269
R ++ + +VYVGNL + +E++FS++G + V + GF FV D +
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
Query: 270 AEDSVRGLDGTRCCGTRIRVEM 335
+++ LDG G IRV +
Sbjct: 298 LNEAISALDGQNLEGRAIRVNV 319
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Frame = +3
Query: 135 VGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDG 299
V N+ + E+ + F ++G +R+V++ R+ P GFAFVEF D DA ++ R ++
Sbjct: 51 VRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNR 110
Query: 300 TRCCGTRIRV 329
G I V
Sbjct: 111 RSFAGREITV 120
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Frame = +3
Query: 96 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFED 260
S + ++ S VYVG + + ++ ++ +FS+YG I +V + R+ GFAF+ +ED
Sbjct: 27 SWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
Query: 261 PRDAEDSVRGLDGTRCCGTRIRVE 332
R +V L+G G I+V+
Sbjct: 87 QRSTILAVDNLNGALVLGRTIKVD 110
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 293
++V L +S+ +I++ F YG I+ V + + P G+AF+E+ RD + + +
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 294 DGTRCCGTRIRVEM 335
DG + G R+ V++
Sbjct: 200 DGQKIDGRRVLVDV 213
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 293
++YVGNL N S+ ++ K+F +G++ V V R+ GF FV+F DA +++
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNLN 345
Query: 294 DGTRCCGTRIRV 329
G I+V
Sbjct: 346 GQLEIAGRAIKV 357
Score = 35.5 bits (78), Expect = 0.025
Identities = 16/54 (29%), Positives = 31/54 (57%)
Frame = +3
Query: 162 KYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRI 323
K ++++ SK+G + +++V +N GF ++ FE+ + A + R L G G I
Sbjct: 488 KEDVKEECSKFGKLNHIFVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMI 541
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 308
V+VG L + + ++ +FS+YG I +V + FV+F + AE+++R L+G +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLNGVQL 321
Query: 309 CGTRIRV 329
GT +R+
Sbjct: 322 GGTTVRL 328
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 275
+Y+G + + EIE FS++G ++ V VARN F F++FEDP AE
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE 115
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 40.7 bits (91), Expect = 7e-04
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG--FAFVEFEDPRDAEDSVRGLDGT 302
++VG L N + E++ IF ++G + +V + PPG FV++ + AE ++ L+GT
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRCGFVQYANKASAEHALSVLNGT 318
Query: 303 RCCGTRIRV 329
+ G IR+
Sbjct: 319 QLGGQSIRL 327
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Frame = +3
Query: 114 DLSC-KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAED 278
D C K++V N+ A+K E+ ++FS +G I+++ + + G+AFVEF ++A +
Sbjct: 665 DKPCTKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALN 724
Query: 279 SVRGLDGTRCCGTRIRVE 332
+ + L T G + +E
Sbjct: 725 AKKALASTHFYGRHLVLE 742
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 237 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 332
+AFVEF DPRDA+D+ LDG G+RI VE
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVE 36
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +3
Query: 237 FAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 332
+AFVEF DPRDA+D+ LDG G+RI VE
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVE 36
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Frame = +3
Query: 114 DLSC----KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRD 269
D SC K++VG L N S+ E++ +FS+YG I+++ + R G F+++E
Sbjct: 102 DCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQ 161
Query: 270 AEDSVRGLDG 299
A ++ L+G
Sbjct: 162 AVAAMEALNG 171
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVEFEDPRDAEDSV 284
L K++VG L N S+ E++ +FS+YG I+++ + R G F+++E A ++
Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 157
Query: 285 RGLDG 299
L+G
Sbjct: 158 EALNG 162
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVRGL 293
K+YV L +K E+ ++FS+YG I ++++A + G+AFV+F A +++ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 294 DG 299
+G
Sbjct: 268 NG 269
Score = 33.9 bits (74), Expect = 0.077
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 212
K+YV + A++Y+I ++F KYGN+ +
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 296
VYV NL + S E+ K+F ++G + + R+ GF FV FE+ DA +V L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 297 G 299
G
Sbjct: 286 G 286
Score = 32.3 bits (70), Expect = 0.23
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA----FVEFEDPRDAEDSVRGLD 296
+YV NL + + ++ + F+ +G I + V R+P G + FV F P +A ++ ++
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 297 G 299
G
Sbjct: 389 G 389
Score = 31.9 bits (69), Expect = 0.31
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 293
+YVG+L + ++ + F++ G + +V V R+ G+ +V + P+DA ++ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 294 DGTRCCGTRIRV 329
+ G IRV
Sbjct: 107 NFMALNGRAIRV 118
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 293
++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 293
++V N+ +N E+ +F +YG+IR ++ GF + + D R A ++R L
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSL 224
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 296
VYV NL + + +++ F +YG I + V ++ GF FV FE+ DA +V L+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 297 G 299
G
Sbjct: 91 G 91
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVEFEDPRDAEDSVR 287
S +YV NL + S ++++IFS +G + + V R+P G FV F P +A +++
Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 190
Query: 288 GLDG 299
L G
Sbjct: 191 QLSG 194
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 123 CK-VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
CK ++VG +G N SK ++E+ FSK+G I + R AF+++ + DA + + ++G
Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-TAFIDYYEMDDALQA-KSMNG 306
Query: 300 TRCCGTRIRVE 332
G+ +RV+
Sbjct: 307 KPMGGSFLRVD 317
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
S ++VG+L ++ ++ ++F +YG+I + V + GFAF+ + +A + L G
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFIYYRHVEEAVAAKEALQG 75
Query: 300 TRCCGT 317
GT
Sbjct: 76 ANLNGT 81
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRG 290
K+ + NL A +I+ +FS G + +V++ +N P GFAFV+F +DA ++++
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKK 391
Query: 291 LDG 299
+G
Sbjct: 392 FNG 394
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 290
K+YV L ++ + F ++GN+ ++ VA P GFAF+ +E +A +++G
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 291 LDGTRCCGTRIRVE 332
+ G G I VE
Sbjct: 138 MHGKFLDGRVIFVE 151
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN---PPGFAFVEFEDPRDAEDSVRG 290
+++VG L + ++E+ FS++G+I + + + R+ GF F+ F D R ++S+R
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 291 LDGTRCCGTRI 323
+ G R G R+
Sbjct: 68 MHG-RDFGDRV 77
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 302
++VG + + ++ + FS++G + +V + G FV+F D + AED++ L+GT
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK-GCGFVQFADRKSAEDAIESLNGT 379
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 284
S K+++G L + + ++ FS +G + V +A + GF FV+F + DA +
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAK 99
Query: 285 RGLDGTRCCGTRIRV 329
+DG G +R+
Sbjct: 100 DAMDGKGLLGRPLRI 114
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 281
+S K++VG L +++ F+ +G + V + GF FV F A ++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 282 VRGLDGTRCCGTRIRVEM 335
++ +DG G +IRV +
Sbjct: 93 IKEMDGKELNGRQIRVNL 110
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 281
+S K++VG L +++ F+ +G + V + GF FV F A ++
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 282 VRGLDGTRCCGTRIRVEM 335
++ +DG G +IRV +
Sbjct: 93 IKEMDGKELNGRQIRVNL 110
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 296
+Y+ NL + S+ + + F+++G I ++ +A++ G+AFV F++P DA + ++
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 297 GTR 305
GT+
Sbjct: 263 GTK 265
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 296
VYV NL + E++K F KYG+I + V ++ G F FV F P A +V ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 297 G 299
G
Sbjct: 287 G 287
Score = 36.7 bits (81), Expect = 0.011
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +3
Query: 93 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFED 260
+SR+ + S +Y+ NL + + +++++FS+YGN+ + V N GF FV + +
Sbjct: 319 ISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSN 377
Query: 261 PRDAEDSVRGLDG 299
P +A +++ ++G
Sbjct: 378 PEEALLAMKEMNG 390
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 296
+YVG+L + ++ + +F++ + N+ V R+ G+A+V F +P DA ++ L+
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 296
+Y+ NL + +++++FS+YGN+ + V NP GF FV + +P +A ++ ++
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 297 G 299
G
Sbjct: 394 G 394
Score = 35.5 bits (78), Expect = 0.025
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVEFEDPRDAEDSVRGLD 296
VYV NL + E+ K F K+G I + V R+ G F FV FE A +V ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 297 G 299
G
Sbjct: 291 G 291
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVEFEDPRDAEDSVRGLD 296
+Y G+L ++ + +F N+ +V V R+ G+A++ F +P DA ++ L+
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 297 GTRCCGTRIRV 329
T IR+
Sbjct: 111 YTPLFDRPIRI 121
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 SCK-VYVGNLGTNASKYEIEKIFSKYGNIR-NVWVARNPPGFAFVEFEDPRDAEDSVRGL 293
+C+ VYVGN+ T ++ +++IF+ G + + + ++ + FV + D R A ++ L
Sbjct: 57 TCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSL 116
Query: 294 DGTRCCGTRIRV 329
+G G I+V
Sbjct: 117 NGRHLFGQPIKV 128
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +3
Query: 129 VYVGNLG---TNASKYEIEKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 293
++VG+L T+A+ Y+ +FS + R +W + GF FV F + +DA+ ++ +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 294 DGTRCCGTRIR 326
+G +IR
Sbjct: 206 NGKWLSSRQIR 216
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 272
VYVGNL ++ ++ + F G I V V R+ GF FV + +A
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-KGFGFVRYNTHPEA 315
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 37.1 bits (82), Expect = 0.008
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
++V NL + ++ +F +Y + V + PG AFVEF D + +++GL G
Sbjct: 179 LFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQG 235
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRD 269
D C ++VG L + ++ + ++ SKYG I+N+ + R+ G+ FVE+E ++
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKE 117
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 36.7 bits (81), Expect = 0.011
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 278
D+ + +VG L +E F++YG++ + + + GF FV F+D + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 279 SVRGLDGTRCCGTRIRV 329
++ G++G G I V
Sbjct: 65 AIEGMNGQDLDGRSITV 81
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 36.7 bits (81), Expect = 0.011
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 278
D+ + +VG L +E F++YG++ + + + GF FV F+D + +D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 279 SVRGLDGTRCCGTRIRV 329
++ G++G G I V
Sbjct: 65 AIEGMNGQDLDGRSITV 81
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.3 bits (80), Expect = 0.014
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 287
S VYV NL + + +FS+YG + +V V R+ GF FV F +P +A+ ++
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 288 GLDG 299
L G
Sbjct: 261 SLCG 264
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN---PPGFAFVEFEDPRDAEDSVRGLDG 299
+YV NL ++ + +E++F +G+I + V GF FV+F+ + A + L G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 300 TRCCGTRIRV 329
+ G ++ V
Sbjct: 174 SMVYGKKLFV 183
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA----RNPPGFAFVEFEDPRDAEDSVRGLD 296
+YV NL + ++ + +IF YG I + V GF FV F + +++ + R L+
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 297 GTRCCGTRIRVEM 335
G G I V +
Sbjct: 366 GFLVDGKPIVVRV 378
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 36.3 bits (80), Expect = 0.014
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +3
Query: 234 GFAFVEFEDPRDAEDSVRGLDGT 302
G+AFV FED RDAED++R D T
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNT 32
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 290
+++VG+L AS+ +++K+F G + V + +NP G AF+ F A+ +V+
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 291 LDGTRCCGTRIRV 329
L G + V
Sbjct: 275 LKSPMINGKKCGV 287
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 284
S ++V +L N ++ +++IF +G + +V +A + P G +VEF+ DAE +
Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156
Query: 285 RGLDGTRCCGTRIR 326
+DG + G ++
Sbjct: 157 LYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 284
S ++V +L N ++ +++IF +G + +V +A + P G +VEF+ DAE +
Sbjct: 97 SLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQ 156
Query: 285 RGLDGTRCCGTRIR 326
+DG + G ++
Sbjct: 157 LYMDGAQIDGKVVK 170
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 123 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVR 287
C++YV N+ + ++ +F +G + +V V+RNP G +V A+ ++
Sbjct: 108 CELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIA 167
Query: 288 GLDGTRCCGTRIRV 329
LDGT G +RV
Sbjct: 168 SLDGTEVGGREMRV 181
Score = 29.5 bits (63), Expect = 1.7
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRG 290
KVYVGNL + FSK+G I + V + FAF+ F + D+
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 271
Query: 291 LDGTRCCGTRIRV 329
+GT+ G RI V
Sbjct: 272 FNGTQYEGRRIIV 284
>At3g13700.1 68416.m01731 RNA-binding protein, putative similar to
mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam
profile:PF00076 rrm:RNA recognition motif
Length = 296
Score = 35.9 bits (79), Expect = 0.019
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVEFEDPRDAEDSVRGLDG 299
+++ NLG N ++ E++++ S+Y + + AR AF +FE+ A D++ L G
Sbjct: 225 LFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 282
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 35.5 bits (78), Expect = 0.025
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 290
K+YVGNL N S+ ++ +IF +G + V + +P GF F++F ++ +
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 291 LDG-TRCCGTRIRV 329
L+G G I+V
Sbjct: 326 LNGKLEIAGRTIKV 339
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 186 SKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGL 293
SKYG + +++V +N GF ++ F+ A + R +
Sbjct: 466 SKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAM 501
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 35.5 bits (78), Expect = 0.025
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 290
++YVGNL +E +F++ G + V + GF FV ++ + ++
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 291 LDGTRCCGTRIRV 329
L+G G +IRV
Sbjct: 310 LNGADLDGRQIRV 322
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 290
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 291 LDGTRCCGTRIRV 329
+G G +RV
Sbjct: 160 FNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 35.5 bits (78), Expect = 0.025
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRG 290
++YVGNL +E +F++ G + V + GF FV ++ + ++
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 291 LDGTRCCGTRIRV 329
L+G G +IRV
Sbjct: 318 LNGADLDGRQIRV 330
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRG 290
K++VGNL N ++ ++F GN+ V V GF FV + E + +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 291 LDGTRCCGTRIRV 329
+G G +RV
Sbjct: 160 FNGYEFEGRPLRV 172
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.5 bits (78), Expect = 0.025
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDS 281
++ K+Y GNL N + +I + N V V N GFAFV + D
Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 282 VRGLDGTRCCGTRIRV 329
+ LDGT G ++V
Sbjct: 143 IDNLDGTEYLGRALKV 158
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRG 290
K++VGNL + + F + G++ V + G+ FV + + E ++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 291 LDGTRCCGTRIRVEM 335
LDG G IRV +
Sbjct: 238 LDGFELEGRAIRVNL 252
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.5 bits (78), Expect = 0.025
Identities = 17/62 (27%), Positives = 39/62 (62%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 296
++ ++VG L ++ + ++++ FS++G I +V + G FV+F + +AE+++ L+
Sbjct: 304 INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 362
Query: 297 GT 302
GT
Sbjct: 363 GT 364
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 35.5 bits (78), Expect = 0.025
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
+++ NL + ++ +F +Y + + + PG AFVE+ED + +++ L G
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 35.5 bits (78), Expect = 0.025
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
+++ NL + ++ +F +Y + + + PG AFVE+ED + +++ L G
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 35.1 bits (77), Expect = 0.033
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 153 NASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTRIRVE 332
N ++EK F YG I NV + RN FAF+++E DA ++ + ++ I VE
Sbjct: 67 NTRTRDLEKHFEPYGKIVNVRIRRN---FAFIQYEAQEDATRALDASNNSKLMDKVISVE 123
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRC--CGTRIRVE 332
ED RDAED++R LD G R+RVE
Sbjct: 2 EDERDAEDAIRALDRFEFGRKGRRLRVE 29
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 35.1 bits (77), Expect = 0.033
Identities = 16/58 (27%), Positives = 35/58 (60%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGT 302
++VG L + ++ ++ + FS +G + +V + G FV+F + + AE+++ L+GT
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK-GCGFVQFANRQSAEEAIGNLNGT 385
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSV 284
S K+++G + + + + + F+KYG + + V + GF FV F A ++
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 285 RGLDGTRCCGTRIRV 329
+ LDG G ++V
Sbjct: 99 QALDGRDLHGRVVKV 113
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 135 VGNLGTNA--SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 308
V N G +A + + ++F+ + + + P GF F+ FE DA+ +++ L+G
Sbjct: 73 VSNSGLSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIV 132
Query: 309 CGTRIRVE 332
G I VE
Sbjct: 133 NGRLIFVE 140
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 34.7 bits (76), Expect = 0.044
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 284
+C VY+GN+ S + I + G + ++ + R+ P GFAF E+E A+ +V
Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65
Query: 285 RGLDG 299
+ G
Sbjct: 66 KLFSG 70
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 34.7 bits (76), Expect = 0.044
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 263
K+++G L + + K F KYG I + + R+ P GF F+ F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 257
K++VG + + ++ E++ F+KYGN+ V R+ GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 34.7 bits (76), Expect = 0.044
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 263
K+++G L + + K F KYG I + + R+ P GF F+ F DP
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFE 257
K++VG + + ++ E++ F+KYGN+ V R+ GF FV F+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFD 158
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 34.7 bits (76), Expect = 0.044
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAEDSVRGL 293
+YV NL + + +I +FS +G + V V R G AFV + DA + R +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 294 DGTRCCGTRIRVEM 335
D G ++ V +
Sbjct: 119 DAKILNGRKLTVSI 132
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 34.7 bits (76), Expect = 0.044
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
+++ NL + ++ +F +Y + + + PG AFVE+ED A +++ L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 34.7 bits (76), Expect = 0.044
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVR 287
K++VG + S+ +++ FS+YG + VA+ P GF FV F + D ++R
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 34.3 bits (75), Expect = 0.058
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +3
Query: 141 NLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 305
N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG
Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
Query: 306 CCGTRIRVE 332
G I V+
Sbjct: 82 VDGREITVQ 90
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 34.3 bits (75), Expect = 0.058
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +3
Query: 141 NLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGLDGTR 305
N+ + ++ +F+KYG + +V++ R+ GFAFV ++ +A +V LDG
Sbjct: 22 NITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRV 81
Query: 306 CCGTRIRVE 332
G I V+
Sbjct: 82 VDGREITVQ 90
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.3 bits (75), Expect = 0.058
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVR 287
S +YVGN+ + E+++ F G + V + + P GFA+VEF + ++S+
Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLI 161
Query: 288 GLDGTRCCGTRIRV 329
L+ + G +I+V
Sbjct: 162 -LNESELHGRQIKV 174
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 34.3 bits (75), Expect = 0.058
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 287
VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFED E++++
Sbjct: 259 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 34.3 bits (75), Expect = 0.058
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPG--FAFVEFEDPRDAEDSVR 287
VYV NL ++ S EIE+ F +G I+ V ++ G +AFVEFED E++++
Sbjct: 318 VYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 34.3 bits (75), Expect = 0.058
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 281
+S K+++G L + F+ +G++ V V R GF FV F D A +
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 282 VRGLDGTRCCGTRIRV 329
+ +DG G IRV
Sbjct: 93 ISEMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 34.3 bits (75), Expect = 0.058
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARNPP---GFAFVEFEDPRDAEDS 281
+S K+++G L + F+ +G++ V V R GF FV F D A +
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 282 VRGLDGTRCCGTRIRV 329
+ +DG G IRV
Sbjct: 93 ISEMDGKELNGRHIRV 108
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 34.3 bits (75), Expect = 0.058
Identities = 16/62 (25%), Positives = 39/62 (62%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLD 296
++ ++VG L ++ + ++++ F+++G I +V + G FV+F + +AE+++ L+
Sbjct: 302 MNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK-GCGFVQFVNRPNAEEALEKLN 360
Query: 297 GT 302
GT
Sbjct: 361 GT 362
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.9 bits (74), Expect = 0.077
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVARN---PPGFAFVEFEDPRDAEDSVRG 290
KVY GNLG N + ++ F + V RN GF F+ FE + + ++
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 291 LDGTRCCGTRIRVEM 335
++G G +R+ +
Sbjct: 280 MNGVEVEGRALRLNL 294
Score = 31.1 bits (67), Expect = 0.54
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDSVRG 290
++YVGNL + E+ +IF + G + +V V GF FV +A+++++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 291 LDGTRCCGTRIRV 329
+ ++ G ++V
Sbjct: 177 FNSSQIGGRTVKV 189
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 33.9 bits (74), Expect = 0.077
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 293
VYVG L S+ + ++F + G + NV+V ++ + F+E+ DA+ +++ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 294 DGTRCCGTRIRV 329
+ + G IRV
Sbjct: 87 NMIKLHGKPIRV 98
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.5 bits (73), Expect = 0.10
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSVRGL 293
+++G+L + + FS+ G + +V V RN P G+ F+EF AE +++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 294 DGTRCCGTRI 323
+GT+ GT +
Sbjct: 86 NGTQMPGTEL 95
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.5 bits (73), Expect = 0.10
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 296
+Y+ NL S+ + +FS +G + +A++ GFAF+EFE A ++ +D
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78
Query: 297 GTRCCGTRI 323
G R G +I
Sbjct: 79 G-RLIGQKI 86
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.5 bits (73), Expect = 0.10
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 263
K+++G + + + + + FS +G + V V R P GF FV F DP
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 33.5 bits (73), Expect = 0.10
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 293
+YV L ++ ++E F+K G + +V + +P GF F+ + DA +R L
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 294 DGTRCCGTRIRVE 332
D + G I VE
Sbjct: 107 DHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 33.5 bits (73), Expect = 0.10
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 293
+YV L ++ ++E F+K G + +V + +P GF F+ + DA +R L
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 294 DGTRCCGTRIRVE 332
D + G I VE
Sbjct: 137 DHSVLQGRVITVE 149
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 275
SCK+++G + S+ + F +G + + ++ GF FV F DP AE
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 275
SCK+++G + S+ + F +G + + ++ GF FV F DP AE
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAE 61
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFED 260
D + K++VG L + E K F KYG I + + ++ P GF FV + D
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD 92
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 33.1 bits (72), Expect = 0.13
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 249 EFEDPRDAEDSVRGLDGTRCCGTRIRVE 332
EF DPRDA+D+ LDG G+RI VE
Sbjct: 20 EFGDPRDADDARHYLDGRDFDGSRITVE 47
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 120 SCK-VYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEFEDPRDAEDSVRGL 293
+C+ VYVGN+ ++ ++++F+ G + + + + + FV + D R A ++ L
Sbjct: 52 TCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSL 111
Query: 294 DGTRCCGTRIRV 329
+G G I+V
Sbjct: 112 NGRHLFGQPIKV 123
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEF 254
VYVGNL S+ ++ + F G I V V R+ GF FV +
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRY 304
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKY---GNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 293
++VG+L + + FS Y + R +W + GF FV F + +DA+ ++ +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 294 DGTRCCGTRIR 326
G +IR
Sbjct: 201 TGKWLGSRQIR 211
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 296
VYVGN+ + E++ F G + V + + P GFA+VEF + +++++ L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 297 GTRCCGTRIRV 329
+ G +++V
Sbjct: 150 ESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 296
VYVGN+ + E++ F G + V + + P GFA+VEF + +++++ L+
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LN 149
Query: 297 GTRCCGTRIRV 329
+ G +++V
Sbjct: 150 ESELHGRQLKV 160
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 278
++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 279 SVRGLDGTRCCGTRIRV 329
++ ++G G I V
Sbjct: 63 AIEEMNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 278
++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 279 SVRGLDGTRCCGTRIRV 329
++ ++G G I V
Sbjct: 63 AIEEMNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 278
++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 279 SVRGLDGTRCCGTRIRV 329
++ ++G G I V
Sbjct: 63 AIEEMNGKELDGRVITV 79
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 32.7 bits (71), Expect = 0.18
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAE 275
K+++G + + + +++ F KYG++ + R+ GF F+ F DP AE
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAE 70
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 32.7 bits (71), Expect = 0.18
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-GFAFVEFEDPRDAEDSVRGLDGTR 305
++VGNL + E+ F ++G + ++ A P +AFV F DA ++ L G
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESL--AFQPGRSYAFVNFNHDEDAFAAIESLQGFP 82
Query: 306 CCGTRIRVE 332
G +R+E
Sbjct: 83 LSGNPLRIE 91
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 141 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRCCGTR 320
NL S + +IF YG I+ + FVEF D RDA + ++G G +
Sbjct: 219 NLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMNGKEIGGKQ 278
Query: 321 IRVE 332
+ +E
Sbjct: 279 VVIE 282
Score = 30.3 bits (65), Expect = 0.95
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 192 YGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
YG++R V + R G V F D RDA+ +VR + G
Sbjct: 129 YGDVRGVQMERISEGIVTVHFYDIRDAKRAVREVCG 164
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVEFEDPRDAEDSVRGLD 296
V+VGN+ + E+++ F G + V + + P GFA+VEF + +++++ L+
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 297 GTRCCGTRIRV 329
+ G +++V
Sbjct: 153 ESELHGRQLKV 163
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 293
+YV L T + ++E F+K G + + ++ P GFAFV +DAE ++ L
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 133
Query: 294 D 296
+
Sbjct: 134 N 134
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRGL 293
+YV L T + ++E F+K G + + ++ P GFAFV +DAE ++ L
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYL 132
Query: 294 D 296
+
Sbjct: 133 N 133
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 263
K++VG + + ++ + F+ YG + V R+ P GF FV F DP
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP 57
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 32.3 bits (70), Expect = 0.23
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVEFEDPRDAEDSVRG 290
+VY+GNL + ++ +I K+FS I +V + +N G+A V+F+D +++
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK- 320
Query: 291 LDGTRCCGTRIRV 329
LD CG +++
Sbjct: 321 LDQQVICGRPVKI 333
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-PGFAFVEFEDPRDAEDSVRGLDG 299
+++GNLG N ++ E+ + S + + + R F+EFED A + L G
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQG 292
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 32.3 bits (70), Expect = 0.23
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 293
V V NL + + ++ ++F +G + V+VA + GF FV F DA+ ++ L
Sbjct: 215 VRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKL 274
Query: 294 DGTRCCGTRIRVE 332
+G +RVE
Sbjct: 275 NGYGYDNLILRVE 287
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 32.3 bits (70), Expect = 0.23
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN--PPGFAFVEFEDPRDAEDSVRGLD 296
+YV NL + ++E++FS++G I + V V N G FVEF +A ++ ++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 297 G 299
G
Sbjct: 285 G 285
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.9 bits (69), Expect = 0.31
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDA----ED 278
KV+VG L + K + F KYG+I + R G+ FV F+D + A ED
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 279 SVRGLDGTR 305
S ++G R
Sbjct: 78 STPIINGRR 86
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 31.9 bits (69), Expect = 0.31
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +3
Query: 129 VYVGNLG---TNASKYEIEKIFSKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDSVRGL 293
++VG+L T+A+ ++ F+ + R +W + GF FV F + +DA+ ++ +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 294 DGTRCCGTRIR 326
+G +IR
Sbjct: 210 NGKWVSSRQIR 220
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 272
VYVGNL ++ ++ ++F G I V V R+ GF FV + +A
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 319
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/68 (20%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAED 278
++ + +VG L + ++++ FS++G++ + + + GF FV F+D + D
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 279 SVRGLDGT 302
++ ++G+
Sbjct: 63 AIEEMNGS 70
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.5 bits (68), Expect = 0.41
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 275
RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A
Sbjct: 135 REDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAH 194
Query: 276 DSVRGLDGT 302
+++ L GT
Sbjct: 195 EAL-SLGGT 202
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 31.5 bits (68), Expect = 0.41
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +3
Query: 141 NLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDG 299
NL S + IF YG ++ V FVEF D RDA ++R ++G
Sbjct: 189 NLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMNG 241
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 31.1 bits (67), Expect = 0.54
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +3
Query: 114 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVEFEDPRDAED 278
D + ++G L S + F KYG++ V + GF F+ F++ + ++
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 279 SVRGLDGTRCCGTRIRVE 332
++ ++G G I V+
Sbjct: 64 AIAAMNGMDLDGRTITVD 81
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 31.1 bits (67), Expect = 0.54
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 105 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG---FAFVEFEDPRDAE 275
RE + VYV ++ + ++ + +FS G + + + +P FAFVEF D + A
Sbjct: 122 REDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGAR 181
Query: 276 DSVRGLDGT 302
S L GT
Sbjct: 182 -SALSLGGT 189
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 30.7 bits (66), Expect = 0.72
Identities = 15/67 (22%), Positives = 38/67 (56%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEFEDPRDAEDSVRGLDGTRC 308
++VG + + ++ +++ +F ++G + +V + FV++ + AE ++ L+GT+
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKR-CGFVQYANRACAEQALSVLNGTQL 338
Query: 309 CGTRIRV 329
G IR+
Sbjct: 339 GGQSIRL 345
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 30.3 bits (65), Expect = 0.95
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPGFAFVEFEDPRDAEDSVRGL 293
K+Y+ NL S +I+++FS+ G+++ + + G A V F DA +V+
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 294 DGTRCCGTRIRVEM 335
+ + G +++E+
Sbjct: 169 NNVQLDGKLMKIEI 182
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 30.3 bits (65), Expect = 0.95
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 284
S ++V + ++++ + + FS+YG + V V + P GFA+V F +AE ++
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 285 RGLD 296
L+
Sbjct: 80 LELN 83
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 275
K+++G + + ++ +++ FS +G + + ++ GF FV F DP AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAE 275
K+++G + + ++ +++ FS +G + + ++ GF FV F DP AE
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVEFEDPRDAEDSVRGL 293
++VG L + EIE + S+YG ++ + V+ G+ VEF D A G+
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 294 DG 299
+G
Sbjct: 264 NG 265
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-WVARNPPGFAFVEF 254
+++VG LG + + ++ KIFS G + V +V FA+++F
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDF 54
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 108 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 263
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 108 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 263
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Frame = +3
Query: 108 EWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDP 263
E DL K+++G + + + + FS YG++ + R+ GF F+ F DP
Sbjct: 2 ESDLG-KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP 57
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 272
KV+VG L + + F +YG+I V + G+ FV F DP A
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 230
V+VGNL K I K FSK+G + +V + P
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVP 206
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +3
Query: 117 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVEFEDPRDAEDS 281
++ K+++G L ++ + + FSK G + V+ GF FV F +A+ +
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 282 VRGLDGTRCCGTRIRVE 332
+ +G + G I V+
Sbjct: 92 LMEFNGQQLNGRTIFVD 108
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDA 272
KV+VG L + + F +YG I V + G+ FV F DP A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 126 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFVEFEDPRDAEDSVRG 290
+++VG L ++ +I ++ +G +R + + N G+AF ++DP + +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 291 LDGTR 305
L+G +
Sbjct: 436 LNGIK 440
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 28.3 bits (60), Expect = 3.8
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Frame = +3
Query: 129 VYVGNLG---TNASKYEIEKIF----SKYGNIRNVWVARN--PPGFAFVEFEDPRDAEDS 281
++VG+L T+A+ ++ F S Y + R +W + GF FV F + +DA+ +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 282 VRGLDGTRCCGTRIR 326
+ ++G +IR
Sbjct: 210 INEMNGKWVSSRQIR 224
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVEFEDPRDA 272
VYVGNL ++ ++ ++F G I V V R+ GF FV + +A
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNTHDEA 323
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-----FAFVEFEDPRDAEDSVRGL 293
+YVG L ++ + F +G+I++V + F FV F + DA ++ +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 294 DGTRCCGTRIRV 329
DG G + V
Sbjct: 75 DGAELYGRVLTV 86
>At1g60095.1 68414.m06771 jacalin lectin family protein contains
similarity to myrosinase-binding protein homolog
[Arabidopsis thaliana] GI:2997767;
Length = 531
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 192 YGNIRNVWVARNPPGFAFVEFEDPRDAE 275
+ IRN+++ N G AFV+F +D++
Sbjct: 404 FDGIRNIYIGHNKMGIAFVKFLYDKDSQ 431
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-PPG----FAFVEFEDPRDAEDSVRGL 293
++V L ++ IFS++G + + V R+ G +AF+EFE+ E + +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 294 DGTRCCGTRIRVE 332
D RI V+
Sbjct: 305 DNALIDDRRIHVD 317
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Frame = +3
Query: 120 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEFEDPRDAEDSV 284
S ++V L + + F+++G + + V + GF FV + D+ +
Sbjct: 55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114
Query: 285 RGLDG 299
G+DG
Sbjct: 115 AGMDG 119
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 189 KYGNIRNVWVARN-PPGFAFVEFEDPRDAEDSVRGLDG 299
K+G +V V + P G V F+D RDA+ + ++G
Sbjct: 439 KHGPFDSVKVCEHHPQGVVLVRFKDRRDAQKCIEAMNG 476
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 27.5 bits (58), Expect = 6.7
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +3
Query: 129 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFVEFEDPRDAEDSVRGL 293
V V NL + ++ ++F +G + VA + GF FV F DA+ ++ L
Sbjct: 176 VRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKL 235
Query: 294 DGTRCCGTRIRVE 332
+G +RVE
Sbjct: 236 NGYGYDNLILRVE 248
>At3g16410.1 68416.m02079 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767, epithiospecifier [Arabidopsis
thaliana] GI:16118845; contains Pfam profiles PF01419
jacalin-like lectin family, PF01344 Kelch motif
Length = 619
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 192 YGNIRNVWVARNPPGFAFVEFE 257
Y N+R V+V + G AFV+FE
Sbjct: 170 YDNVRKVYVGQAQYGIAFVKFE 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,627,467
Number of Sequences: 28952
Number of extensions: 205075
Number of successful extensions: 750
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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