Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H01
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   1.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   4.0  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.0  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   5.2  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   6.9  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   6.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    24   9.1  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    24   9.1  

>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 235  YGLFQINDQYWCST-GSTPGKDCHVTCNPLLTDDISVAATCAKKIXQRHKFDAWYGWENH 411
            +G  ++N+QY  +  GST      V   PL T+   V     +++   +K  AWY ++ H
Sbjct: 1451 FGRIRMNEQYVMTLEGSTDLAQSTVVLPPLPTEIADVLDAHDQRVLDLYKTYAWY-YQKH 1509

Query: 412  CQHGL 426
               G+
Sbjct: 1510 GNIGV 1514


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 385 DAWYGWENHCQHGLPD 432
           D W  WENH  H  PD
Sbjct: 44  DYWGKWENHQYHPSPD 59


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 441 VANIWQSMLTVIFPSVPSVKLVALXNLLGARSCH 340
           +++IWQS    +  +VP++K   +    G  +C+
Sbjct: 444 ISSIWQSEFIKLIKTVPNMKSAKIDATYGCDACN 477


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 136 DESLMSNWVCLVENESGRFTDQIG 207
           D S +    CL+ N SG  TDQ G
Sbjct: 194 DASALEKKSCLLPNSSGTLTDQRG 217


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 66  ECQKGEQYNVLRHYVSKRVSC 4
           +C+K ++  +LRH+ S  + C
Sbjct: 108 DCKKRDENGLLRHFESPHIQC 128


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 231 RLRALPDQ*PILVQHRVHSWKGL 299
           ++ ALP++  + V HRV + KGL
Sbjct: 423 KVNALPEETTLAVNHRVDASKGL 445


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 230 ETTGSSRSMTNTGAAP 277
           E  G SR++TNT AAP
Sbjct: 356 EFAGFSRNLTNTAAAP 371


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -1

Query: 225 SVLIHFTNLVGKPSAFVLDKAD 160
           +V+I  +N+VG+P + +L+KA+
Sbjct: 164 AVVIGRSNIVGRPMSILLEKAN 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,827
Number of Sequences: 5004
Number of extensions: 34862
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)