Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_H01
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186... 32 0.24
11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340 31 0.42
05_01_0149 + 989698-991797 30 0.73
12_01_0761 + 6913969-6914346 29 1.7
03_02_0583 + 9635002-9637299 28 2.9
02_05_0356 + 28252154-28252897,28253171-28253377,28253473-282537... 28 3.9
02_01_0654 + 4860897-4860932,4860973-4861161,4861394-4861597,486... 27 5.1
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 27 9.0
08_02_1130 + 24517319-24518149,24519374-24519868,24519954-245201... 27 9.0
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 27 9.0
>04_03_0286 +
13915705-13915984,13916478-13917062,13918188-13918661,
13918963-13920208,13920282-13920297
Length = 866
Score = 31.9 bits (69), Expect = 0.24
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 190 FTDQIGKVNKNGSRDYGLFQINDQYWCSTGSTPGKDCHVTC-NPLLTDDIS 339
FT ++N G D+ ++Q+ DQ +G+ P K C+VTC N +T+DI+
Sbjct: 124 FTLGYARLNITGC-DFDIYQVLDQ----SGNVPAKLCNVTCPNRGITEDIA 169
>11_01_0476 - 3672812-3672866,3673356-3673454,3685385-3686340
Length = 369
Score = 31.1 bits (67), Expect = 0.42
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 276 GAAPVLVIDLEEPVVSRSVLIHFTNLVGKPSAFVLDKADPVTHQ 145
G A +LV+ E V+R+ + HF KP +++ D A PV+ +
Sbjct: 98 GDAELLVLRSGEWTVTRAPVAHFVGRADKPPSWITDMAIPVSER 141
>05_01_0149 + 989698-991797
Length = 699
Score = 30.3 bits (65), Expect = 0.73
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 248 RSMTNTGAAPGPLLERIAT*LVIRY*LTTLAWQL 349
RS TNTG P + R+ T +V + L T+ W+L
Sbjct: 401 RSFTNTGRMPELFVMRLGTIMVTGFILATIFWRL 434
>12_01_0761 + 6913969-6914346
Length = 125
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = -1
Query: 384 KLVALXNLLGARSCHANVVSQ*RITSHVAILSRSGPGAAPVLVIDLEEPVVSRSVLIHFT 205
+LVA +R H + + H+ + + S PG+ + V D PVV + L
Sbjct: 20 ELVAAAGKSMSRLSHGQIRRLRPSSGHIVVTAASPPGSTVITVADPTYPVVVATALASPV 79
Query: 204 NLVGKPSAFVLDKAD 160
++ P V AD
Sbjct: 80 DVATDPVTAVAPAAD 94
>03_02_0583 + 9635002-9637299
Length = 765
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 248 RSMTNTGAAPGPLLERIAT*LVIRY*LTTLAWQL 349
R+ TNT P L R+AT +V + L T+ W+L
Sbjct: 466 RAFTNTRRTPELFLIRLATVVVTAFILATVFWRL 499
>02_05_0356 +
28252154-28252897,28253171-28253377,28253473-28253710,
28254853-28255220
Length = 518
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 401 HPYQASNLWRWXIFLAHVAATLMSSVSNGLQVTWQSFPG 285
H Y A N W + I L + A L+ + +Q+ SF G
Sbjct: 265 HAYWAPNFWVFYILLDKIFAFLLRRLGFNIQIPEASFTG 303
>02_01_0654 +
4860897-4860932,4860973-4861161,4861394-4861597,
4862503-4862604
Length = 176
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 363 LLGARSCHANVVSQ*RITSHVAILSRSGPGAAPVLVIDLEEPVVSRSVLI-HFTNL 199
+LG ++ +V++ TS V + PG +PVL +D+ S ++++ HF L
Sbjct: 101 VLGMQATVGALVAKALTTSAVPYYQATSPGQSPVLALDVFLVQASANIILSHFLGL 156
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 258 PILVQHRVHSWKG 296
P+L QHR H WKG
Sbjct: 47 PLLSQHRSHRWKG 59
>08_02_1130 +
24517319-24518149,24519374-24519868,24519954-24520179,
24520267-24520291,24520925-24521234,24521328-24521888
Length = 815
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 106 LVQELRRQGFDESLMSNWVCLVENESGRFTDQIGKVNKNG 225
L +LR G +L W C VE + F +G KNG
Sbjct: 352 LCHKLRSMG---ALRDTWHCTVEEQIAMFLTTVGHHKKNG 388
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 288 RSGPGAAPVLVIDLEEPVVSRSVLIHFTNLVGKPSAFVLDKADP 157
+S G P L ++ +S LI + +GKP AF D DP
Sbjct: 256 KSFVGKGPPKSGQLRSGLIGKSGLIGLSGPIGKPGAFDDDDDDP 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,314,383
Number of Sequences: 37544
Number of extensions: 241236
Number of successful extensions: 605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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