Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H01
         (444 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58895| Best HMM Match : SRCR (HMM E-Value=0)                        28   4.0  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   4.2  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        27   5.3  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         27   7.0  
SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)              27   7.0  
SB_33341| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_58895| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1838

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 265 WCSTGSTPGKDCHVTCNPLLTDDISVAATCA 357
           W S    PG+D  V C P   DDI +A T A
Sbjct: 61  WLSDQQCPGEDVRVICEP---DDIQLAPTQA 88


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 24.6 bits (51), Expect(2) = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 394  YGWENHCQHGLPDIS 438
            YGW N C HG   +S
Sbjct: 2165 YGWNNCCTHGATPMS 2179



 Score = 21.4 bits (43), Expect(2) = 4.2
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = +1

Query: 352  CAKKIXQRHKFDAWYGWENHCQH 420
            C  K    + +  + GW N C H
Sbjct: 2131 CNNKYRWNNCYTHYNGWSNCCSH 2153


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 385  QTCGVGKSSWRT*LPR*CRQSVTDYKSRG--NPFQEWTRCCTSIG 257
            +TCG G   +R+ + R C   V DY   G  + + EWT+C +S G
Sbjct: 1462 KTCGTG---FRSRI-RNCTNPVPDYGVDGEFSDWTEWTKCTSSCG 1502


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 268  CSTGSTPGKDCHVTCNPLLTDDISVAATCAKKI 366
            CSTG T GK+C V  +   T      ATC  +I
Sbjct: 1542 CSTGYT-GKNCEVNIDECATKPCLNGATCVDQI 1573


>SB_14143| Best HMM Match : Gelsolin (HMM E-Value=1.1e-07)
          Length = 546

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 295 DCHVTCNPLLTDDISVAATCAKKIXQRHKF 384
           D +V+ N   TD++++A+TCA+ +    KF
Sbjct: 108 DENVSNNEPHTDNVNIASTCAEPLADASKF 137


>SB_33341| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 284 VDPVLHQYWSLI 249
           VDP+LH YW +I
Sbjct: 124 VDPILHDYWDMI 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,398
Number of Sequences: 59808
Number of extensions: 293383
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)