Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H01
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    31   0.28 
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (...    27   6.1  
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ...    27   6.1  
U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 208  KVNKNGSRDYGLFQINDQYWCSTGSTPGKDCHVTCNP 318
            KV  NG  D G  +I ++Y C  G    +D  V C P
Sbjct: 902  KVLPNGRPDVGSLKIKEEYLCQAGQVVVRDLCVPCAP 938


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
           protein B0024.8 protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 106 LVQELRRQGFDESLMSNWVCLVEN 177
           L+ EL      E + SNW CLVEN
Sbjct: 159 LITELHHILIPELVKSNWTCLVEN 182


>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 5
           protein.
          Length = 1434

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 158 GSALSRTKADGLPTKLVK*IRTDLETTGSSRSMTNTGAAPGP 283
           GS LS++    L    ++    +L+T+G+SR+  ++ A+PGP
Sbjct: 98  GSPLSQSTR--LDETFIEEYSIELDTSGNSRNNISSAASPGP 137


>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.4 protein.
          Length = 1393

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 158 GSALSRTKADGLPTKLVK*IRTDLETTGSSRSMTNTGAAPGP 283
           GS LS++    L    ++    +L+T+G+SR+  ++ A+PGP
Sbjct: 98  GSPLSQSTR--LDETFIEEYSIELDTSGNSRNNISSAASPGP 137


>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +1

Query: 163 CLVENESGRFTDQIGKVNKNGSRDYGLFQINDQYWCSTGSTPGKDCHVT--CNPLLTDDI 336
           C+   ESG     IG     GS   G +QI   Y+   G    K    T        DD+
Sbjct: 23  CICMRESG--CKPIGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEAAWKRCADDL 80

Query: 337 SVAATCAKKIXQRHK 381
           + A TC +    R+K
Sbjct: 81  NCATTCVENYYNRYK 95


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 310 KSRGNPFQEWTRCCTSIGH*SGRAR 236
           KS    FQ+  +CC S+GH S  ++
Sbjct: 438 KSENQRFQDVCQCCKSVGHKSKNSK 462


>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
 Frame = +1

Query: 163 CLVENESGRFTDQIGKVNKNGSRDYGLFQINDQYWCSTGSTPGKDCHVT--CNPLLTDDI 336
           C+   ESG     IG     GS   G +QI   Y+   G    K    T        +D+
Sbjct: 23  CICMRESG--CKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEAAWKRCANDL 80

Query: 337 SVAATCAKKIXQRHK 381
           S A TC +    R+K
Sbjct: 81  SCATTCVENYYNRYK 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,198,137
Number of Sequences: 27780
Number of extensions: 196928
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)