Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_H01
         (444 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47160.1 68415.m05889 anion exchange family protein contains ...    29   1.1  
At3g62270.1 68416.m06996 anion exchange family protein contains ...    29   1.9  
At2g44660.1 68415.m05558 ALG6, ALG8 glycosyltransferase family p...    27   7.5  
At5g35753.1 68418.m04282 expressed protein                             26   10.0 
At4g11980.1 68417.m01907 MutT/nudix family protein low similarit...    26   10.0 
At4g00600.1 68417.m00084 tetrahydrofolate dehydrogenase/cyclohyd...    26   10.0 
At2g05250.1 68415.m00553 DNAJ heat shock N-terminal domain-conta...    26   10.0 
At2g05230.1 68415.m00551 DNAJ heat shock N-terminal domain-conta...    26   10.0 

>At2g47160.1 68415.m05889 anion exchange family protein contains
           some similarity to SWISS-PROT:P04919 anion transport
           protein (anion exchange protein 1) [Mouse] {Mus
           musculus}
          Length = 704

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 202 FGR*TVRFRSRQGRP-SYSSNFHRSLV--F*APALIRIW*XVSHRNAKRVPKG 53
           FG      RSR+ R   Y + + RSL+  +  P ++ +W  VS+  A  VPKG
Sbjct: 209 FGLLLTGLRSRKARSWRYGTGWLRSLIADYGVPLMVLVWTGVSYIPAGDVPKG 261


>At3g62270.1 68416.m06996 anion exchange family protein contains
           similarity to anion exchanger 3, cardiac splice form -
           Rattus norvegicus, PIR:A42497
          Length = 703

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 202 FGR*TVRFRSRQGRP-SYSSNFHRSLV--F*APALIRIW*XVSHRNAKRVPKG 53
           FG      RSR+ R   Y + + RSLV  +  P ++ +W  VS+     VPKG
Sbjct: 209 FGLLITALRSRKARSWRYGTGWLRSLVADYGVPLMVLVWTGVSYIPTGDVPKG 261


>At2g44660.1 68415.m05558 ALG6, ALG8 glycosyltransferase family
           protein similar to SP|P40351 Dolichyl pyrophosphate
           Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC
           2.4.1.-) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) {Saccharomyces cerevisiae};
           contains Pfam profile PF03155: ALG6, ALG8
           glycosyltransferase family
          Length = 383

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 401 HPYQASNLWRWXIFLAHVAATLMSSVSNGLQVTWQSFPG 285
           H Y A N W + I L    A L+  +   +Q+   SF G
Sbjct: 224 HAYWAPNFWVFYIILDKGLAVLLRKLGYEIQIPSASFTG 262


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 48  QYNVLRHYVSKRVSC 4
           QY  LR YV+KR+SC
Sbjct: 105 QYEYLRKYVNKRLSC 119


>At4g11980.1 68417.m01907 MutT/nudix family protein low similarity
           to SP|P54570 ADP-ribose pyrophosphatase (EC 3.6.1.13)
           {Bacillus subtilis}; contains Pfam profile PF00293:
           NUDIX domain
          Length = 309

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 124 RQGFDESLMSNWVCLVENESGRFTD 198
           R   D SL  NW+  +E+ESG   D
Sbjct: 71  RDAIDSSLFRNWLRNLESESGILAD 95


>At4g00600.1 68417.m00084 tetrahydrofolate
           dehydrogenase/cyclohydrolase, putative similar to
           SP|P09440 C-1-tetrahydrofolate synthase, mitochondrial
           precursor (C1-THF synthase) [Includes:
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9);
           Formyltetrahydrofolate synthetase (EC 6.3.4.3)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF02882: Tetrahydrofolate dehydrogenase/cyclohydrolase,
           NAD(P)-binding domain, PF00763: Tetrahydrofolate
           dehydrogenase/cyclohydrolase, catalytic domain
          Length = 310

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 228 RSVLIHFTNLVGKPSAFVLDKAD 160
           R+V+I  +N+VG P+A +L K D
Sbjct: 179 RAVVIGRSNIVGMPAALLLQKED 201


>At2g05250.1 68415.m00553 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 48  QYNVLRHYVSKRVSC 4
           QY  LR YV+KR+SC
Sbjct: 182 QYEYLRKYVNKRLSC 196


>At2g05230.1 68415.m00551 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 706

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 48  QYNVLRHYVSKRVSC 4
           QY  LR YV+KR+SC
Sbjct: 182 QYEYLRKYVNKRLSC 196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,735,003
Number of Sequences: 28952
Number of extensions: 187081
Number of successful extensions: 451
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)