Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G22
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    28   3.5  
12_02_1094 + 26032135-26032164,26032975-26033152,26033234-260340...    27   6.2  
11_04_0009 - 12132781-12133272                                         27   8.2  
04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864     27   8.2  

>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 339 EHVVHSGTDSVEVRNLRNIWHVFSGECFGTEIVVVVME 452
           E + HSG  + +V  L N W+++    F  + VV+V E
Sbjct: 418 ELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455


>12_02_1094 +
           26032135-26032164,26032975-26033152,26033234-26034017,
           26034135-26034216,26034968-26035177
          Length = 427

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 400 CQIFLKFRTSTLSVPEWTTCSKIK 329
           C++ L+F+   + + EW +C K K
Sbjct: 326 CKLALRFQRKEVKIQEWESCQKAK 349


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 389 PQVPNFNTVGAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 264
           P V +F+  G GVD M  + + A+A++A        D+S GG
Sbjct: 19  PPVADFD--GEGVDGMAPEAVNATASSARLGAVASGDWSGGG 58


>04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864
          Length = 203

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 386 QVPNFNTVGAGVDYMFKDKIGASATAAHTDVFNRNDYSLGGKLNLFKTPTTSLDFNAG 213
           + P    + A  D +    + A+A A    VF+  D+ +GGK +    PT + D + G
Sbjct: 34  EAPGGGALLAAGDDVTAANLFAAAVATEGPVFDMPDFKMGGKKSDDAAPTDAGDEDGG 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,143,334
Number of Sequences: 37544
Number of extensions: 254584
Number of successful extensions: 605
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)