Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G22
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  29   2.1  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               28   4.8  
SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)                    28   4.8  
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 370  TLSVPEWTTCSKIKLVHLRPPHTPMSLTATTTLWAE 263
            TLS  + T+ S     ++ PPH+P + T TTT   E
Sbjct: 1748 TLSTLKTTSTSTSTTKYIPPPHSPPTTTTTTTTTPE 1783


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = -3

Query: 316 RPPHTPMSLTATTTLWAEN*IFSXXXXXRWTSTPVGRSSIHHSLSPRGNPAPVFL 152
           RPP  P S T+ TT  A     S       T++PV  SS   + S    PAP  L
Sbjct: 129 RPPPRPAS-TSLTTSAAFTSSTSSAASTSLTTSPVSTSSTSSAASTSLTPAPNIL 182


>SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)
          Length = 1117

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 195 CIELLPTGVEVQRRGGRLEKIQFSAQRVVVAV 290
           CI L+ T  +V+RR  +L  + FSA+ V ++V
Sbjct: 318 CIRLVNTRDDVKRRSEQLVNLAFSARHVGISV 349


>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = -2

Query: 491 FGDKMTAAG---KVNLFHNNNHDFSAKAF 414
           F ++ T++G   KV LFH  N+ F+AK+F
Sbjct: 35  FAEQDTSSGLTTKVCLFHGKNNPFTAKSF 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,018,312
Number of Sequences: 59808
Number of extensions: 291597
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)