Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G22
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51610.1 68414.m05814 cation efflux family protein / metal to...    29   1.3  
At1g76070.1 68414.m08834 expressed protein                             27   5.2  
At1g20240.1 68414.m02528 hypothetical protein                          27   5.2  
At3g42940.1 68416.m04509 expressed protein                             27   6.9  
At2g43250.1 68415.m05375 expressed protein  and genefinder             27   6.9  

>At1g51610.1 68414.m05814 cation efflux family protein / metal
           tolerance protein, putative (MTPc4) member of the cation
           diffusion facilitator (CDF) family, or cation efflux
           (CE) family, PMID:11500563
          Length = 457

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 352 WTTCSKIKLVHLRPPHTPMSLTATTTLWAEN*IFSXXXXXRWTSTP-VGRSSIHHSLSPR 176
           +T   ++K + +   H+  ++T  T LW    +FS      WTS+  V  + + HS++  
Sbjct: 97  FTRAKQVKRIEINDQHSQRAVT--TALWCNFLVFSLKFGVWWTSSSHVIMAEVVHSVADF 154

Query: 175 GNPA 164
            N A
Sbjct: 155 ANQA 158


>At1g76070.1 68414.m08834 expressed protein
          Length = 272

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 458 NLFHNNNHDFSAKAFATKNMPNIPQVPN 375
           +L HNN+H+++A      + P +P VPN
Sbjct: 40  DLHHNNHHNYTAANKMFFSGPMVPLVPN 67


>At1g20240.1 68414.m02528 hypothetical protein
          Length = 566

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +1

Query: 145 FEKEKLVLGSHEDLMNGVSNFFQPALKSSDVVGVLKRFSFPPRE 276
           ++ + LV+   +D +NGV + +   +KS +V+G  K +S   R+
Sbjct: 481 YDGKHLVVREMKDSLNGVVHVYDMEVKSWEVIGSTKSWSSRVRD 524


>At3g42940.1 68416.m04509 expressed protein
          Length = 193

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 339 EHVVHSGTDSVEVRNLRNIWHVFSGEC 419
           E ++ SG D  ++  + N WH+F   C
Sbjct: 160 EDMLESGFDDKQIYRMHNCWHMFYEGC 186


>At2g43250.1 68415.m05375 expressed protein  and genefinder
          Length = 625

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -2

Query: 467 GKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDKIGASATAAHT 300
           G +NLF  + H     AF    +P+    P F + GA    + K  + A    A T
Sbjct: 460 GSLNLFLTHTHKAVTFAFTKVAVPSKAMAPGFASSGAKSTSLVKASLSAEKIRAVT 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,861,688
Number of Sequences: 28952
Number of extensions: 205149
Number of successful extensions: 509
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)