Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G20
         (135 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   0.65 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   1.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   3.5  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 0.65
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 85  HCSDGWTSTY 56
           HCSDG++ +Y
Sbjct: 171 HCSDGYSGSY 180



 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 37  ENERRSHKCWSSRRYSG 87
           E+   SH+C  S  YSG
Sbjct: 162 EDIGNSHRCHCSDGYSG 178


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +1

Query: 19  IGESW--PENERRSHKCWSSRRYSGP 90
           I E W  PE  +R+ KC   + YS P
Sbjct: 457 IHEPWTAPEQVQRAAKCIIGKDYSLP 482


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.4 bits (38), Expect = 3.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 13  LGIGESWPENERRSHKCWSSRRYSG 87
           L I +  PE+  +S++C +  R +G
Sbjct: 185 LHIRDVGPEDGYKSYQCRTKHRLTG 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,186
Number of Sequences: 336
Number of extensions: 363
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 25
effective length of database: 114,185
effective search space used:  2169515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)