Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G20
         (135 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   0.78 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   1.8  

>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 72  PSLQWPRPRLWLKENNH 122
           PS++W  PR WLK   +
Sbjct: 192 PSVKWRMPRFWLKRRTN 208


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 109 FSQSRGLGHCSDGWTST 59
           F  +  L HCSDGW  T
Sbjct: 333 FRHAHVLVHCSDGWDRT 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 505,280
Number of Sequences: 5004
Number of extensions: 6215
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 25
effective length of database: 2,237,378
effective search space used: 42510182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)