Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G20
         (135 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1116 + 9197761-9199956                                           27   2.8  
05_03_0072 + 8073201-8073360,8073899-8073975,8074554-8074688           26   4.9  
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    26   4.9  

>06_01_1116 + 9197761-9199956
          Length = 731

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 28  SWP-ENERRSHKCWSSRRYSGPGHGFG*RKIII 123
           SWP ENER   KC     +S   H +   +III
Sbjct: 621 SWPMENERNKEKCNQEFHFSIEEHFYSSHQIII 653


>05_03_0072 + 8073201-8073360,8073899-8073975,8074554-8074688
          Length = 123

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 25 ESWPENERRSHKCWSSRRYSGPGHG 99
          E+WP   + +   W SR  SG G G
Sbjct: 25 EAWPAGSKATTANWGSRISSGEGDG 49


>02_01_0425 -
           3102629-3104692,3106505-3108546,3109918-3109989,
           3110157-3111444
          Length = 1821

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 109 FSQSRGLGHCSDGWTSTYDCVSHSLANFLQFLEGI 5
           + + R LG    G +ST  C+    +  LQFL G+
Sbjct: 441 YREKRRLGSQVGGASSTDSCIDQEKSVLLQFLAGL 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,162
Number of Sequences: 37544
Number of extensions: 49187
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 14,793,348
effective HSP length: 25
effective length of database: 13,854,748
effective search space used: 263240212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)