Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G20
         (135 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70852-4|AAK29816.2|   93|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical p...    25   5.6  
AC006618-6|AAK68247.1|  107|Caenorhabditis elegans Hypothetical ...    25   7.4  
Z81122-12|CAB03359.1|  235|Caenorhabditis elegans Hypothetical p...    25   9.8  
U66405-1|AAB48388.1|  235|Caenorhabditis elegans caveolin-1 prot...    25   9.8  

>U70852-4|AAK29816.2|   93|Caenorhabditis elegans Hypothetical
           protein F45E4.5 protein.
          Length = 93

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 64  WSSRRYSGPGHGF 102
           W   RYS PGHGF
Sbjct: 40  WGRPRYSPPGHGF 52


>U88308-19|AAB42328.1| 1927|Caenorhabditis elegans Hypothetical
           protein C32E8.11 protein.
          Length = 1927

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = -3

Query: 115 FSFSQSRGLGHC----SDGWTSTYDCVSH 41
           +    S G G+C    +D WT  Y C +H
Sbjct: 55  YKMHSSSGSGYCDCGDADAWTEGYACANH 83


>AC006618-6|AAK68247.1|  107|Caenorhabditis elegans Hypothetical
           protein C45B2.3 protein.
          Length = 107

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 25  ESWPENERRSHKCWSSRRYSGPGHGFG 105
           + W +  R   K + S +Y  P  GFG
Sbjct: 74  DDWKKQTRWGQKDYRSNKYQAPKSGFG 100


>Z81122-12|CAB03359.1|  235|Caenorhabditis elegans Hypothetical
           protein T13F2.8 protein.
          Length = 235

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  PENERRSHKCWSSRRYSGPG 93
           P  E++  KCW SR   G G
Sbjct: 70  PVKEKKEKKCWWSRCQKGEG 89


>U66405-1|AAB48388.1|  235|Caenorhabditis elegans caveolin-1
           protein.
          Length = 235

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 34  PENERRSHKCWSSRRYSGPG 93
           P  E++  KCW SR   G G
Sbjct: 70  PVKEKKEKKCWWSRCQKGEG 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,132
Number of Sequences: 27780
Number of extensions: 35374
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,740,198
effective HSP length: 25
effective length of database: 12,045,698
effective search space used: 228868262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)