Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G20
         (135 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   1.8  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   1.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   4.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    19   7.2  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -3

Query: 88  GHCSDGWTSTYDC-VSHSLANFLQFLE 11
           G  S+G+T   DC  +H    F +  E
Sbjct: 351 GQISNGYTPVLDCHTAHIACKFAEIKE 377


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -3

Query: 88  GHCSDGWTSTYDC-VSHSLANFLQFLE 11
           G  S+G+T   DC  +H    F +  E
Sbjct: 62  GQISNGYTPVLDCHTAHIACKFAEIKE 88


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
 Frame = -3

Query: 88  GHCSDGWTSTYDC-VSHSLANFLQFLE 11
           G  S+G+T   DC  +H    F    E
Sbjct: 351 GQISNGYTPVLDCHTAHIACKFADIKE 377


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 49   RSHKCWSSRRY 81
            RSH  W  RR+
Sbjct: 1677 RSHSTWDPRRH 1687



 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 13  LGIGESWPENERRSHKCWSSRRYSG 87
           L I +  PE+  ++++C +  R +G
Sbjct: 165 LHIRDVGPEDGYKTYQCRTKHRLTG 189


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 25  ESWPENERRSHKCWSSRRYSG 87
           E +P +E+R    W+S  Y G
Sbjct: 136 EFFPFDEQRCVLKWASWTYDG 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,558
Number of Sequences: 438
Number of extensions: 456
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 25
effective length of database: 135,393
effective search space used:  2572467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)