Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G19
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   2.2  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   3.0  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    25   3.9  

>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 324 PRYYFQYPMLVHNNCANITSLYLYQNN 404
           PRY  + PMLVH +   IT + +  +N
Sbjct: 696 PRYILEVPMLVHGSQYTITLVSVKDSN 722


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 134 IKKKSYHYAFYGPLGS 87
           +KK+ + Y F+GP+G+
Sbjct: 6   VKKEKFEYEFFGPIGA 21


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 270 GGSLLKLFRESFCSRIYVPRYYFQYPMLVHNNCAN 374
           G S L LF     S   +P  Y   PML +  CAN
Sbjct: 594 GSSRLDLFVSMVGSVCCIPLIYMYPPMLHYKACAN 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,135
Number of Sequences: 5004
Number of extensions: 39876
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)