Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G19
         (442 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0524 + 18321110-18323978,18324098-18324576                       29   1.7  
08_02_1110 + 24371934-24374763,24375034-24375518                       29   2.2  
11_06_0359 - 22683236-22683484,22684069-22684263,22684450-226847...    27   5.1  
02_05_0472 + 29314486-29315040,29315170-29315319,29317439-293177...    27   5.1  
12_01_0248 - 1841454-1841820,1842223-1842728                           27   8.8  

>09_04_0524 + 18321110-18323978,18324098-18324576
          Length = 1115

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 363 NCANITSLYLYQNNI 407
           NC  +TSLYLYQN++
Sbjct: 275 NCTELTSLYLYQNSL 289


>08_02_1110 + 24371934-24374763,24375034-24375518
          Length = 1104

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 363 NCANITSLYLYQNNI 407
           NC  +TSLYLYQN +
Sbjct: 270 NCTELTSLYLYQNTL 284


>11_06_0359 -
           22683236-22683484,22684069-22684263,22684450-22684734,
           22686424-22686624,22688853-22689107,22689178-22689328,
           22689466-22689535,22690176-22690434,22691333-22691461
          Length = 597

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 14  VDRDRSIVTHRVFAHRYYTRAIVNQIQVVHKTHNG 118
           +DRD  +V HR+ +    +  I+N +   +  HNG
Sbjct: 464 MDRDMEVVPHRLESLTICSADIINSLAFSYNDHNG 498


>02_05_0472 +
           29314486-29315040,29315170-29315319,29317439-29317741,
           29317823-29317933,29318622-29318732,29318760-29318828
          Length = 432

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 245 VISSTSTKWRLLVK--AISREFLFQNLCSTLL 334
           +++ T  KWR LVK  +I R F+ Q L  ++L
Sbjct: 296 LVNGTHRKWRKLVKDLSIPRRFIMQKLAISML 327


>12_01_0248 - 1841454-1841820,1842223-1842728
          Length = 290

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 76  GSRIVAMCKNPVRNYRPVSVN 14
           G ++V +C++P R +RP  +N
Sbjct: 156 GCKVVYLCRDPNRKFRPWDIN 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,398,700
Number of Sequences: 37544
Number of extensions: 217291
Number of successful extensions: 414
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)