Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G19
         (442 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)                    28   3.9  
SB_42490| Best HMM Match : V-set (HMM E-Value=0.00058)                 27   6.9  
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_16560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_52484| Best HMM Match : AbfB (HMM E-Value=0.011)
          Length = 782

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 107 FYGPLGSDLLWLSYSSDVQKPC 42
           FY P+ S  LW +YSS     C
Sbjct: 67  FYAPIPSQFLWTTYSSSSSSVC 88


>SB_42490| Best HMM Match : V-set (HMM E-Value=0.00058)
          Length = 452

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 80  VNQIQVVHKTHNGMISFLLG*PTSQK*QFL-FM*TKYSN 193
           VN+IQ  H T        LG PT Q  QFL  M +KY N
Sbjct: 3   VNRIQANHSTSGMHDPCALGAPTQQAMQFLEAMGSKYKN 41


>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 236 VILVISSTSTKWRLLVKAISREFLFQNLCSTLLFSIPYACAQ*LCKYHVVV 388
           V +V+S   T +  L + +   ++  +   T+  S+   CA  LC+Y  +V
Sbjct: 289 VYVVMSPVCTMFMSLCRHVHHVYVVMSPVCTMFMSLCRQCATCLCRYVAIV 339


>SB_16560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 25  PVDSYAQGFCTSLLYESHSKSDPSGP*NA 111
           P D+Y Q   +  +Y S +++ P GP NA
Sbjct: 63  PTDAYGQLEFSGAVYPSRARNRPEGPSNA 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,953,625
Number of Sequences: 59808
Number of extensions: 282341
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)