Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G19
         (442 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065800-1|BAC06019.1|  325|Homo sapiens seven transmembrane hel...    30   4.1  
BC018941-1|AAH18941.1|  137|Homo sapiens transmembrane protein 1...    29   5.4  
BC011760-1|AAH11760.1|  137|Homo sapiens transmembrane protein 1...    29   5.4  
BC036467-1|AAH36467.1|  282|Homo sapiens Lix1 homolog (mouse) pr...    29   9.4  
AK098400-1|BAC05298.1|  282|Homo sapiens protein ( Homo sapiens ...    29   9.4  

>AB065800-1|BAC06019.1|  325|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 325

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 276 SLLKLFRESFCSRIYVPRYYFQYPMLVHNNCANITSLYLY 395
           S+L + R  FC    +P  Y ++  L H +CA+I    +Y
Sbjct: 161 SILLILRLPFCGNHVIPHTYCEHMGLAHLSCASIKINIIY 200


>BC018941-1|AAH18941.1|  137|Homo sapiens transmembrane protein 113
           protein.
          Length = 137

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 220 LDLILCYFSNFQYFNKMAAPC*SYFERVFVPEFMFHVIIFNT-LCLCTII 366
           L L LCY S   +       C  YF  V+ P F +  +  +T +C+C  I
Sbjct: 27  LVLGLCYMSYLAFLYMTFDFCCLYFSTVYAPSFKYICVHTDTHICVCVCI 76


>BC011760-1|AAH11760.1|  137|Homo sapiens transmembrane protein 113
           protein.
          Length = 137

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 220 LDLILCYFSNFQYFNKMAAPC*SYFERVFVPEFMFHVIIFNT-LCLCTII 366
           L L LCY S   +       C  YF  V+ P F +  +  +T +C+C  I
Sbjct: 27  LVLGLCYMSYLAFLYMTFDFCCLYFSTVYAPSFKYICVHTDTHICVCVCI 76


>BC036467-1|AAH36467.1|  282|Homo sapiens Lix1 homolog (mouse)
           protein.
          Length = 282

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 249 FPVLQQNGGSLLKLFRESFCSRIYVPRYYFQYPM 350
           F +L  NG   LK  RE+ CSR  V  YY QY +
Sbjct: 167 FQLLHWNGS--LKALRETKCSRQEVISYYSQYSL 198


>AK098400-1|BAC05298.1|  282|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25534 fis, clone CBR08513. ).
          Length = 282

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 249 FPVLQQNGGSLLKLFRESFCSRIYVPRYYFQYPM 350
           F +L  NG   LK  RE+ CSR  V  YY QY +
Sbjct: 167 FQLLHWNGS--LKALRETKCSRQEVISYYSQYSL 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,704,609
Number of Sequences: 237096
Number of extensions: 1309943
Number of successful extensions: 1830
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1821
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)