Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G19
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine rece...    28   3.5  
Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transport...    27   8.0  

>U70858-6|AAB09180.2|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein35 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 282 LKLFRESFCSRIYVPRY---YFQYPMLVHNNCANITSLYLYQNNI 407
           + L ++SF   IY+  Y   YF  PM+VHN+         Y ++I
Sbjct: 211 INLLKQSFGQAIYLFIYIPVYFTIPMIVHNDVIGFLLSTFYWSSI 255


>Z83238-8|CAB05799.2|  355|Caenorhabditis elegans Hypothetical
           protein T08G3.10 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +1

Query: 193 FITTMNASPLDLILCYFSNFQY 258
           FI T+NA+ + L+LCYF + QY
Sbjct: 312 FINTINAT-VHLLLCYFMSSQY 332


>Z92832-6|CAB07375.2|  572|Caenorhabditis elegans Hypothetical
           protein F31D4.7 protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 397 W*RYNDVIFAQLLCTSIGY 341
           W  +N V+FA  +CT+IGY
Sbjct: 239 WDFWNAVLFAGTICTTIGY 257


>AF101313-1|AAC69223.1| 1802|Caenorhabditis elegans Abc transporter
            family protein 4 protein.
          Length = 1802

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -3

Query: 227  RSKGLAFMVVINYYI*FT*TKTVIFDLLVTLIKKKSYHYAFYGPLGSDLLWLS 69
            RS G AF++     + F          L+T  KKKS H      +   + WL+
Sbjct: 1151 RSDGAAFLIAYGLIVSFAVCVAGYSQFLITERKKKSKHMQLLSGIRPWMFWLT 1203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,685
Number of Sequences: 27780
Number of extensions: 222896
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)