Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G19
         (442 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45275.1 68418.m05557 expressed protein Requires functional a...    27   7.4  
At5g56040.1 68418.m06992 leucine-rich repeat protein kinase, put...    26   9.8  
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica...    26   9.8  
At3g28890.1 68416.m03606 leucine-rich repeat family protein cont...    26   9.8  

>At5g45275.1 68418.m05557 expressed protein Requires functional
           assignment.
          Length = 570

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 25  PVDSYAQGFCTSLLYESHS 81
           P+ S   GF  +L+YESHS
Sbjct: 491 PIGSLVYGFLAALVYESHS 509


>At5g56040.1 68418.m06992 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 953

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 363 NCANITSLYLYQNNI 407
           NC  + +LYLYQN+I
Sbjct: 263 NCTELQNLYLYQNSI 277


>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|Q9U7E0
           Transcriptional regulator ATRX homolog {Caenorhabditis
           elegans}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1261

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 156 NNSFCSCKLNIVIYYNHEC 212
           + S CSCK+N+ IY +  C
Sbjct: 109 HESECSCKINVRIYIDQGC 127


>At3g28890.1 68416.m03606 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 711

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 315 IYVPRYYFQYPMLVHNNCANITSLYLYQNN 404
           ++V  +  Q P  +  N +N+TSLYL +NN
Sbjct: 224 LFVNNFLGQIPSSI-GNLSNLTSLYLCKNN 252


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,750,640
Number of Sequences: 28952
Number of extensions: 196242
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)