Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G17
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    40   7e-04
SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)                  36   0.011
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)                  36   0.015
SB_4687| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.080
SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)                 31   0.32 
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.56 
SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)               27   4.0  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             27   4.0  
SB_45661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   27   6.9  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +2

Query: 11  FNPVADAIGMGVTFLIFGACCVGSFFFTLFMVPETKGKSFQEIQEMLAG 157
           F  + DAI +  T+  +G      F F L  VPETKGK+ ++I+ +  G
Sbjct: 452 FVNIEDAITIQGTYWFYGGLSFLGFLFVLMFVPETKGKTLEQIERLFDG 500


>SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 47  TFLIFGACCVGSFFFTLFMVPETKGKSFQEIQEMLAG 157
           TF++F    +G + FT F+VPETKG+S  +I     G
Sbjct: 7   TFIVFLVLVLGFWLFTYFLVPETKGRSIDDITRQFRG 43


>SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)
          Length = 124

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +2

Query: 11  FNPVADAIGMGVTFLIFGACCVGSFFFTLFMVPETKGKSFQEIQEMLAGK 160
           F  +  +IG   TF  +G  CV +  F    VPETK K+ ++I   L  K
Sbjct: 37  FLDLLGSIGTSGTFFFYGLICVIAIVFIYKYVPETKNKTLEQISAELNSK 86


>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
          Length = 201

 Score = 35.5 bits (78), Expect = 0.015
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 47  TFLIFGACCVGSFFFTLFMVPETKGKSFQEIQEMLAG 157
           TF++F A     + FT F VPETKG++ ++I +   G
Sbjct: 144 TFIVFMALVAIFWTFTFFFVPETKGRTIEDITDHFRG 180


>SB_4687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 33.1 bits (72), Expect = 0.080
 Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 26  DAIGM-GVTFLIFGACCVGSFFFTLFMVPETK 118
           D +G  G  + IFG C V +FF+T+F+VPET+
Sbjct: 56  DKLGFTGPYWFIFG-CLVIAFFYTIFLVPETR 86


>SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)
          Length = 194

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 376 MVFSTQYHPGVWNLFPIWRQARPLSQLGWI*APRNVGGVVRYFTSA*PFG 227
           ++FST   PG  +++P WR  R     G +  PR V    +Y T   P G
Sbjct: 89  LLFSTTAPPGFPSMYPSWRNFRRSFTYGSLVMPRIVTARFKYRTVQKPIG 138


>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -1

Query: 243 LPNPSGITGVSLCYVMLKFATLVFMMTYFPASISWISWKLLPLVSGTMNRVKKKEPTQHA 64
           LPN  G+T   +CY M K    V  +T  P     +S K+LP V G     +    ++  
Sbjct: 257 LPNVQGVTQCEMCYPMSKLLPSVQGVTQCPRCYP-VS-KVLPSVQGVTRCPRCYPVSKVL 314

Query: 63  PKIKKVTPIP 34
           P ++  T  P
Sbjct: 315 PNVRGFTQCP 324



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = -1

Query: 243 LPNPSGITGVSLCYVMLKFATLVFMMTYFPASISWISWKLLPLVSGTMNRVKKKEPTQHA 64
           LPN  G+T  S CY + K    V  +T     + +   KLLP V G          ++  
Sbjct: 219 LPNVQGVTQCSRCYPVSKVLPSVQGVT--QCEMCYPMSKLLPNVQGVTQCEMCYPMSKLL 276

Query: 63  PKIKKVTPIP 34
           P ++ VT  P
Sbjct: 277 PSVQGVTQCP 286


>SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -1

Query: 276 GMWGV*FAISPLPNPSGITGVSLCYVMLKFATLV--FMMTYFPASI-SWISWKLLPLVSG 106
           G  GV   ISP     GI  V +C+++  +  +V  + + YF  S  S + W   P    
Sbjct: 174 GSIGVWNEISPYLGGVGIASVVVCFLVCLYYNVVISWCVFYFVQSFQSPLPWAACPTHKV 233

Query: 105 TMNRVKKKEP 76
           T+  + + EP
Sbjct: 234 TIGNITRMEP 243


>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
          Length = 405

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -3

Query: 274 NVGGVVRYFTSA*PFG-NNRRKLMLCYVKICYTGFYDDLLSGEHFLDLLETLALSLRYHE 98
           N G ++ Y  S  PFG +N  +L +C            LLS + +++L ET +  ++   
Sbjct: 87  NKGNLIVYGGSGIPFGQSNSAQLHIC------------LLSKKEWIEL-ETTSTKIKNRR 133

Query: 97  QSEEEGADAARSEDQESD 44
           Q   EG+D   SED +SD
Sbjct: 134 Q---EGSDQEDSEDDDSD 148


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 353 SRSLEFVPDMATGSTSVTTGMDLSSTECGGCSSLFH 246
           S S    PD  T +TSV+T + L  T C G  ++ H
Sbjct: 250 STSSSATPDAKTNNTSVSTIVSLLITLCRGSPAITH 285


>SB_45661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 100 EQSEEEGADAARSEDQESD 44
           E+S+EEG+D   S+ +ESD
Sbjct: 112 EESDEEGSDGEESDGEESD 130



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 100 EQSEEEGADAARSEDQESD 44
           E+S+EEG+D   S+ +ESD
Sbjct: 52  EESDEEGSDGEGSDGEESD 70


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 297  SCDRGRACRHIGNKFQ 344
            SCDRG  C H+G K++
Sbjct: 1920 SCDRGLHCAHLGLKYR 1935


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,755,336
Number of Sequences: 59808
Number of extensions: 223166
Number of successful extensions: 659
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)