Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G16
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.3  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    27   3.1  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    26   5.3  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 545 CYKVFDQGYQWPLVVCVLLHC 483
           CY  FD  Y +   + VLLHC
Sbjct: 585 CYSFFDYNYTFSSALVVLLHC 605


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 121 SSSRGIFEPPSEACHNPAHGHSTMLDERCVRRS 219
           S S G FE  S     PAH HS +L    V RS
Sbjct: 499 SISMGAFEQLSTPLEAPAHKHSAVLQPLEVNRS 531


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 446 RCGVNNGHLDSDYNVVGHRQLMATDSPGRKLYNIIRRW 559
           + GV   +LD D  ++ H+Q   T    R   + +  W
Sbjct: 168 KLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSW 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,061
Number of Sequences: 5004
Number of extensions: 61776
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)