Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G16
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    29   3.2  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    29   3.2  
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896...    29   4.2  
06_03_0846 - 25328224-25330613,25330716-25330794                       28   7.3  
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    28   7.3  
10_02_0136 + 5719136-5719780,5719923-5720237                           27   9.7  

>03_02_0901 +
           12267042-12267182,12267949-12268095,12268163-12268253,
           12268367-12268485,12268779-12268969,12269440-12269650,
           12270072-12270309,12270944-12271329,12271933-12271956,
           12271984-12272077,12272341-12272525,12273025-12273255,
           12273665-12273730,12273816-12274034,12274764-12275003,
           12275244-12275423,12276269-12276535,12276612-12276815,
           12276896-12277048
          Length = 1128

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 248 DTLKYWDIGSAFLIGGNAKVYEGSGWVHVSVPTHAYNRKALR 373
           + ++Y+D     L+GG     E +G++  S+  H ++RK L+
Sbjct: 754 ELVEYFDPCHPILVGGIGLGEENTGYMQASLKRHRWHRKVLK 795


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 247  HMVILDASNSSGARIVRQALWS 182
            HM ILD  N  G  ++R+A WS
Sbjct: 2841 HMAILDEVNEYGENVLRRAFWS 2862


>09_04_0300 -
           16488358-16488447,16488684-16489116,16489377-16489642,
           16490015-16490044,16490282-16490606,16491752-16492035,
           16492154-16492376,16493117-16493173,16494454-16494947
          Length = 733

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 439 RFQCVDLFCCWLVGVVIS 386
           R+ CVD  CCWLVG V S
Sbjct: 63  RWSCVDS-CCWLVGCVCS 79


>06_03_0846 - 25328224-25330613,25330716-25330794
          Length = 822

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 545 IIRRWXEWLENVDSYKE 595
           II+RW  W   VD++KE
Sbjct: 640 IIQRWMRWFSEVDNFKE 656


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 65  AKVNADCGIVSKDDW-DGLTPVHVEYL 142
           A +  DC I+S+ +W D LT + V YL
Sbjct: 530 ANLGMDCAIISEGEWADTLTDISVGYL 556


>10_02_0136 + 5719136-5719780,5719923-5720237
          Length = 319

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 586 AVNIFEPFGPPSDYVIKFSTRAISGH 509
           AV+I EPFG    YV  ++ R + GH
Sbjct: 152 AVDIPEPFGRRPAYVSNWAMRCVDGH 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,692
Number of Sequences: 37544
Number of extensions: 413703
Number of successful extensions: 887
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)