Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G14
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.44 
SB_45417| Best HMM Match : Homeobox (HMM E-Value=5.1e-09)              27   9.5  

>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 77  RRSCKSP-PPCNRCSNNIEPRFSSSIHXXXXXXXXXXXXXXXFTSTQTDSHLSASRLPP 250
           R+S KSP PP NR +    P+ SSS H               F+S+Q  +  S SR  P
Sbjct: 153 RKSSKSPSPPTNRTTQGESPKTSSSGH-GQHSSRTAVRRSASFSSSQRRTSESESRSKP 210


>SB_45417| Best HMM Match : Homeobox (HMM E-Value=5.1e-09)
          Length = 216

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +1

Query: 4   APAPTYPLQFTQP--AQSGAF 60
           APAP YP  FT P  A  GAF
Sbjct: 51  APAPVYPSYFTSPRLATEGAF 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,551,287
Number of Sequences: 59808
Number of extensions: 66459
Number of successful extensions: 239
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)