Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G10
         (592 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26490.1 68415.m03178 transducin family protein / WD-40 repea...    30   1.3  
At1g35610.1 68414.m04421 DC1 domain-containing protein contains ...    28   4.1  
At3g25840.1 68416.m03219 protein kinase family protein contains ...    28   5.4  
At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5)...    28   5.4  
At5g03440.2 68418.m00299 expressed protein                             27   7.1  
At5g03440.1 68418.m00298 expressed protein                             27   7.1  

>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           related to En/Spm transposon family of maize
          Length = 465

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +1

Query: 361 RLKDSEALRATLELPSDSCIDFVQTVDGLVFSSTNYLKLDGGKRKQFLQTAAHAIMQKMT 540
           R+ DS+ L + +    D+    V T + +VFS +    +   KR Q  +   H +MQ +T
Sbjct: 234 RIADSKCLES-IPAHDDAVNSVVSTTEAIVFSGSADGTVKAWKRDQQGKYTKHTLMQTLT 292

Query: 541 REQ 549
           +++
Sbjct: 293 KQE 295


>At1g35610.1 68414.m04421 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 612

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 590 RNGSTYVHGHSSTSCSLVIFCMIAC 516
           R  +TY + HS+ S   +IFC + C
Sbjct: 573 RRNATYYYNHSNRSTHRMIFCSLEC 597


>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 320 SDDMRKVSTALELRCHRHY*HRHTQIFQQRFEYNTANKFE*DELID 183
           SDD  K S   + R H+H+ HRH     ++ E    +  +  E++D
Sbjct: 21  SDDTEKASKRHKHRHHKHHHHRHRHHRDKKRENEIPSAGDETEILD 66


>At3g02885.1 68416.m00283 gibberellin-regulated protein 5 (GASA5) /
           gibberellin-responsive protein 5 identical to GASA5
           [Arabidopsis thaliana] GI:1289320
          Length = 97

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 530 CMIACAAVCRNCFLLPPSSF 471
           CM  C   C+ C  +PP +F
Sbjct: 56  CMFFCLKCCKKCLCVPPGTF 75


>At5g03440.2 68418.m00299 expressed protein
          Length = 98

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 277 HLSSSAVETLRMSSDSM--NHLS*CWVIRRRLKDSEALRATLELPSDSCIDFVQTVDGLV 450
           ++SS++      SS+ +  NH    W   R+    +    T E+P +  I F  T + L+
Sbjct: 9   NVSSNSSNDKEKSSEEIFVNHAEIAWQEMRKKWVGDPSNRTSEMPDEPVIGFNATYEDLL 68

Query: 451 FSSTNYLK 474
            S+T + K
Sbjct: 69  TSNTPFNK 76


>At5g03440.1 68418.m00298 expressed protein
          Length = 98

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 277 HLSSSAVETLRMSSDSM--NHLS*CWVIRRRLKDSEALRATLELPSDSCIDFVQTVDGLV 450
           ++SS++      SS+ +  NH    W   R+    +    T E+P +  I F  T + L+
Sbjct: 9   NVSSNSSNDKEKSSEEIFVNHAEIAWQEMRKKWVGDPSNRTSEMPDEPVIGFNATYEDLL 68

Query: 451 FSSTNYLK 474
            S+T + K
Sbjct: 69  TSNTPFNK 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,438,488
Number of Sequences: 28952
Number of extensions: 228039
Number of successful extensions: 617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)