Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G07
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    27   1.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   5.9  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   7.8  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 286 LYLTF*QFDALSGFKVSNVRYVAEALRYV 200
           +YLT     ++SG   SNVRY AEA+  V
Sbjct: 406 IYLTKNGRISISGLNTSNVRYFAEAINAV 434


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 47  CVVTVVTIYGQGIPIRKCPAGEHSV 121
           C+V    + G+ IP+ K PA + S+
Sbjct: 432 CIVNESMLTGESIPVSKIPATDQSM 456


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 198 ATYRSASATYRTFETLKPESASNCQNV 278
           +T RS   T  +F  L  ESA N +NV
Sbjct: 200 STLRSTQGTPMSFPNLALESADNVENV 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,470
Number of Sequences: 5004
Number of extensions: 33762
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)