BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I09A02NGRL0001_G07 (473 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g30680.1 68414.m03751 toprim domain-containing protein contai... 30 0.70 At1g63370.1 68414.m07164 flavin-containing monooxygenase family ... 27 4.9 At1g62620.1 68414.m07065 flavin-containing monooxygenase family ... 27 4.9 At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 27 8.6 At1g30660.1 68414.m03749 toprim domain-containing protein contai... 27 8.6 >At1g30680.1 68414.m03751 toprim domain-containing protein contains Pfam profile: PF01751 toprim domain Length = 709 Score = 30.3 bits (65), Expect = 0.70 Identities = 14/47 (29%), Positives = 19/47 (40%) Frame = +2 Query: 77 QGIPIRKCPAGEHSVLYCPQQAEPSCDNPTVHEMDPPSGLCDVPQCF 217 QG+ CP G+HS L CP + ++ P G CF Sbjct: 119 QGVDAENCPPGQHSGLICPTCEGGNSGEKSLSLFIAPDGSSATWNCF 165 >At1g63370.1 68414.m07164 flavin-containing monooxygenase family protein / FMO family protein similar to FMO5 from Cavia porcellus [SP|P49109]; contains Pfam profile: PF00743 Flavin-binding monooxygenase-like Length = 450 Score = 27.5 bits (58), Expect = 4.9 Identities = 10/38 (26%), Positives = 18/38 (47%) Frame = +3 Query: 177 WTHHQGCATYRSASATYRTFETLKPESASNCQNVKYNF 290 WTH + + S Y+ +T+ + +C KY+F Sbjct: 256 WTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHF 293 >At1g62620.1 68414.m07065 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase 3 (FMO3) from Rattus norvegicus [GI:12006730], FMO1 from Canis familiaris] [GI:15420722], FMO1 from Homo sapiens [SP|Q01740]; contains Pfam profile: PF00743 Flavin-binding monooxygenase-like Length = 450 Score = 27.5 bits (58), Expect = 4.9 Identities = 10/38 (26%), Positives = 18/38 (47%) Frame = +3 Query: 177 WTHHQGCATYRSASATYRTFETLKPESASNCQNVKYNF 290 WTH + + S Y+ +T+ + +C KY+F Sbjct: 256 WTHSMIESVHEDGSVVYQNGKTISVDIIMHCTGYKYHF 293 >At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly identical to auxin transport protein; BIG [Arabidopsis thaliana] GI:21779966; contains Pfam profiles PF02207: Putative zinc finger in N-recognin, PF00569: Zinc finger ZZ type Length = 5098 Score = 26.6 bits (56), Expect = 8.6 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = +2 Query: 167 VHEMDPPSGLCDVPQ 211 +H++D P+G+CD PQ Sbjct: 749 LHKVDTPAGICDGPQ 763 >At1g30660.1 68414.m03749 toprim domain-containing protein contains Pfam profile PF01751: Toprim domain Length = 321 Score = 26.6 bits (56), Expect = 8.6 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +2 Query: 77 QGIPIRKCPAGEHSVLYCPQ 136 QGI + CP G S L CP+ Sbjct: 45 QGIDAQNCPPGVRSCLICPK 64 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,747,625 Number of Sequences: 28952 Number of extensions: 173825 Number of successful extensions: 432 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 432 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 811731120 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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