Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G06
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)                   29   4.0  
SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)                     28   7.0  
SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  

>SB_58923| Best HMM Match : RVT_1 (HMM E-Value=0.022)
          Length = 270

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -1

Query: 211 IVDNKTVINKLNYSQTSRGSVNAFKKYHDYSGFDEKRKKIVI 86
           +VD+ T+INKL+    S  S+N FK Y      +++++K+ I
Sbjct: 33  LVDHDTLINKLSIYGVSGKSLNWFKSY-----LEDRKQKVTI 69


>SB_9946| Best HMM Match : IQ (HMM E-Value=0.00018)
          Length = 786

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 424 TTILPIPLYYLVIPFTVLTI-AENIEVIN 507
           TTI    +YY VIPFTV  I  +N +VIN
Sbjct: 527 TTIFYKEIYYCVIPFTVDEIDKDNEKVIN 555


>SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 525 IAFYVTNINECCLP-SYCSVKVVFC 596
           + +Y T +N C +  +YC ++V+FC
Sbjct: 393 VNYYGTRVNYCGIRVNYCGIRVIFC 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,650
Number of Sequences: 59808
Number of extensions: 295894
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)