Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G04
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   4.8  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   4.8  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   6.4  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   8.5  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    25   8.5  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 439  RSVTTIEVTNGWLEIVQKLFRLVTLYLAVLDSGSL 335
            + V+  +VTN WLE+V   F L+ +Y+ +   GS+
Sbjct: 1109 KEVSAEDVTNFWLELV---FTLLLVYIKLSLKGSI 1140


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 176 GNFYSGDSYIVLSTTGEEDRLAWDIHF 256
           GN     S I  + T E +RLAW++++
Sbjct: 225 GNLLYPSSSISATCTSEAERLAWNVYY 251


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 257 WIGSKTSQDEAGAAAIL 307
           W+GSK +  E GAA++L
Sbjct: 102 WVGSKNTLREGGAASVL 118


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 146 EPVAVPTTHYGNFYSGDSYIVLSTTGE 226
           +P +VPT  YG+ ++ DS  ++ +T +
Sbjct: 589 QPPSVPTMPYGSRFANDSDSMMGSTAD 615


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 279 WLVLEPIQKWMSQARRSSSPVVLSTI*ESPE 187
           +L LEP +  M+ +R    P+VL T  +SPE
Sbjct: 229 FLGLEPFRLIMNDSRWDGIPLVLETPAKSPE 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,228
Number of Sequences: 5004
Number of extensions: 57707
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)