Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G04
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.0  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 99  TPGKNAALKYGGSRISNP--LRSLPRITAISTLEIP 200
           T G+NA L+Y G + + P  L ++ R  +I  + +P
Sbjct: 421 TYGRNAGLRYRGPKQNKPKVLHAIRRGASILRVSMP 456


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +2

Query: 179 NFYSGDSYIVLSTTGEEDRLAWDIHF 256
           +F  GD+ I ++   +++++ WD  F
Sbjct: 665 SFQPGDTIICINIKRQKEKIEWDPGF 690


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 146 RNPRSAIFQCRIFSRSS 96
           RNPRSA+   R  + SS
Sbjct: 324 RNPRSAVLAAREITSSS 340


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 118 AAFFPGVREGWM 83
           AAFF G+ + WM
Sbjct: 344 AAFFRGMMQAWM 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,206
Number of Sequences: 438
Number of extensions: 4248
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)