Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_G04
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to vil... 183 7e-47
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil... 178 2e-45
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V... 176 1e-44
At4g30160.1 68417.m04289 villin, putative similar to villin 2 (... 175 1e-44
At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to vil... 104 5e-23
At1g16220.1 68414.m01942 protein phosphatase 2C family protein /... 30 1.3
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 29 2.4
At3g50370.1 68416.m05508 expressed protein 29 2.4
At1g20795.1 68414.m02604 F-box family protein contains Pfam prof... 29 2.4
At5g07710.1 68418.m00884 exonuclease family protein contains exo... 29 3.1
At3g02750.1 68416.m00267 protein phosphatase 2C family protein /... 28 4.1
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 28 5.4
At5g36250.1 68418.m04373 protein phosphatase 2C, putative / PP2C... 28 5.4
At2g20000.1 68415.m02338 cell division cycle family protein / CD... 28 5.4
At3g03190.1 68416.m00315 glutathione S-transferase, putative ide... 27 9.5
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 27 9.5
>At2g41740.1 68415.m05159 villin 2 (VLN2) nearly identical to villin
2 (VLN2) [Arabidopsis thaliana] GI:3415115
Length = 976
Score = 183 bits (446), Expect = 7e-47
Identities = 96/172 (55%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Frame = +2
Query: 86 PAFANSGKKCGIEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTT-GEEDRLAWDIHFWI 262
PAF +G+K G EIWRIE+FE V VP + +G FY GD+YIVL TT + +DIHFWI
Sbjct: 8 PAFQGAGQKPGTEIWRIENFEAVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWI 67
Query: 263 GSKTSQDEAGAAAILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPAIRYLDGGHASG 442
G TSQDEAG AA+ TV L D G A+QHREIQG+ES +FL YF+P I L+GG ASG
Sbjct: 68 GKDTSQDEAGTAAVKTVEL-DAVLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASG 126
Query: 443 FNHVTINAGAEKRLFQIKGKRNVRVKQVEPRASSLNKGDCFILDVDHQIYVF 598
F V E RL+ KGKR +R+KQV SSLN D FILD + +IY F
Sbjct: 127 FKTVEEEV-FETRLYTCKGKRAIRLKQVPFARSSLNHDDVFILDTEEKIYQF 177
Score = 69.3 bits (162), Expect = 2e-12
Identities = 55/193 (28%), Positives = 85/193 (44%), Gaps = 11/193 (5%)
Frame = +2
Query: 53 IPNSIKMPEVHPAFANSGKKCGIEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEED 232
I S + E P SG K +E+W + +P G YSGD Y+VL T +
Sbjct: 372 IAKSAPVNEDIPPLLESGGK--LEVWYVNGKVKTPLPKEDIGKLYSGDCYLVLYTYHSGE 429
Query: 233 RL-AWDIHFWIGSKTSQDEAGAAAILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPA 409
R + + W G K+ ++ AI N +G +Q R +G E QF+ FQP
Sbjct: 430 RKDEYFLSCWFGKKSIPEDQD-TAIRLANTMSNSLKGRPVQGRIYEGKEPPQFVALFQPM 488
Query: 410 IRYLDGGHASGFNHVTINAGAEKR--------LFQIKGK--RNVRVKQVEPRASSLNKGD 559
+ L GG +SG+ + + L Q+ G N + QVE A+SLN +
Sbjct: 489 V-VLKGGLSSGYKSSMGESESTDETYTPESIALVQVSGTGVHNNKAVQVETVATSLNSYE 547
Query: 560 CFILDVDHQIYVF 598
CF+L ++++
Sbjct: 548 CFLLQSGTSMFLW 560
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +2
Query: 245 DIHFWIGSKTSQDEAGAAAILTVN-LDDEQFQGSAIQHREIQGYESKQFLDYF 400
+I+ W+G T DE AA+ L E + R IQGYES F F
Sbjct: 287 EIYIWVGRVTQVDERKAASQSAEEFLASENRPKATHVTRVIQGYESHSFKSNF 339
>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
3 (VLN3) [Arabidopsis thaliana] GI:3415117
Length = 965
Score = 178 bits (434), Expect = 2e-45
Identities = 95/172 (55%), Positives = 112/172 (65%), Gaps = 1/172 (0%)
Frame = +2
Query: 86 PAFANSGKKCGIEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTT-GEEDRLAWDIHFWI 262
PAF G+K G EIWRIE+FEPV VP + +G FY GD+YIVL TT + +DIHFWI
Sbjct: 10 PAFQGVGQKPGTEIWRIENFEPVPVPKSEHGKFYMGDTYIVLQTTQNKGGAYLFDIHFWI 69
Query: 263 GSKTSQDEAGAAAILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPAIRYLDGGHASG 442
G TSQDEAG AA+ TV L D G A+Q+REIQG+ES +FL YF+P I L+GG ASG
Sbjct: 70 GKDTSQDEAGTAAVKTVEL-DAALGGRAVQYREIQGHESDKFLSYFKPCIIPLEGGVASG 128
Query: 443 FNHVTINAGAEKRLFQIKGKRNVRVKQVEPRASSLNKGDCFILDVDHQIYVF 598
F E RL+ KGKR V +KQV SSLN D FILD +IY F
Sbjct: 129 FKKPE-EEEFETRLYTCKGKRAVHLKQVPFARSSLNHDDVFILDTKEKIYQF 179
Score = 74.5 bits (175), Expect = 5e-14
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 11/186 (5%)
Frame = +2
Query: 77 EVHPAFANSGKKCGIEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEEDRLA-WDIH 253
++ P GK +E+W I+ + H G YSGD Y+VL T +R + +
Sbjct: 383 DIPPLLEGGGK---LEVWYIDANSKTVLSKDHVGKLYSGDCYLVLYTYHSGERKEDYFLC 439
Query: 254 FWIGSKTSQDEAGAAAILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPAIRYLDGGH 433
W G ++Q++ A L + + +G +Q R +G E QF+ FQ + L GG
Sbjct: 440 CWFGKNSNQEDQETAVRLASTMTN-SLKGRPVQARIFEGKEPPQFVALFQHMV-VLKGGL 497
Query: 434 ASGFNHVTINAGAEKR--------LFQIKGK--RNVRVKQVEPRASSLNKGDCFILDVDH 583
+SG+ + G+ L Q+ G N + QVE A+SLN DCF+L
Sbjct: 498 SSGYKNSMTEKGSSGETYTPESIALIQVSGTGVHNNKALQVEAVATSLNSYDCFLLQSGT 557
Query: 584 QIYVFV 601
++++V
Sbjct: 558 SMFLWV 563
>At5g57320.1 68418.m07160 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 962
Score = 176 bits (428), Expect = 1e-44
Identities = 89/180 (49%), Positives = 120/180 (66%), Gaps = 1/180 (0%)
Frame = +2
Query: 62 SIKMPEVHPAFANSGKKCGIEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEED-RL 238
+ M ++ A +G+K GIEIWRIE+F+PV VP +G F++GDSYIVL TT L
Sbjct: 2 TFSMRDLDQALQGAGQKSGIEIWRIENFKPVTVPQESHGKFFTGDSYIVLKTTASRSGSL 61
Query: 239 AWDIHFWIGSKTSQDEAGAAAILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPAIRY 418
DIH+W+G +SQDEAGA A++TV L D G A+Q+RE+QG+E+++FL YF+P I
Sbjct: 62 HHDIHYWLGKDSSQDEAGAVAVMTVEL-DSALGGRAVQYREVQGHETEKFLSYFKPCIIP 120
Query: 419 LDGGHASGFNHVTINAGAEKRLFQIKGKRNVRVKQVEPRASSLNKGDCFILDVDHQIYVF 598
+GG ASGFNHV + RL+ KGK VRVK+V S+LN D FILD + +I+ F
Sbjct: 121 QEGGVASGFNHVKPEE-HQTRLYICKGKHVVRVKEVPFVRSTLNHEDVFILDTESKIFQF 179
Score = 61.7 bits (143), Expect = 4e-10
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Frame = +2
Query: 119 IEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEEDRLAWDIHFWIGSKTSQDEAGAA 298
+++WRI E + + FYSGD YI+ + EDR + W G K S +E A+
Sbjct: 396 LQVWRINCEEKILLEAAEQSKFYSGDCYILQYSYPGEDREEHLVGTWFG-KQSVEEDRAS 454
Query: 299 AILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPAIRYLDGGHASGF------NHV-- 454
AI N E + Q R +G E QF Q I + GG + F N +
Sbjct: 455 AISLANKMVESMKFVPAQARINEGKEPIQFFVIMQSFITF-KGGVSDAFKKYIAENDIPD 513
Query: 455 TINAGAEKRLFQIKGK--RNVRVKQVEPRASSLNKGDCFILDVDHQIYVF 598
T LF+++G N++ Q+E ++ LN C+IL D ++ +
Sbjct: 514 TTYEAEGVALFRVQGSGPENMQAIQIEAASAGLNSSHCYILHGDSTVFTW 563
>At4g30160.1 68417.m04289 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 974
Score = 175 bits (427), Expect = 1e-44
Identities = 89/180 (49%), Positives = 117/180 (65%), Gaps = 1/180 (0%)
Frame = +2
Query: 62 SIKMPEVHPAFANSGKKCGIEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTTG-EEDRL 238
S+ M ++ PAF +G+K GIEIWRIE+F P +P + G F++GDSYIVL TT + L
Sbjct: 2 SVSMRDLDPAFQGAGQKAGIEIWRIENFIPTPIPKSSIGKFFTGDSYIVLKTTALKTGAL 61
Query: 239 AWDIHFWIGSKTSQDEAGAAAILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPAIRY 418
DIH+W+G TSQDEAG AA+ TV L D G A+Q+RE+QG+E+++FL YF+P I
Sbjct: 62 RHDIHYWLGKDTSQDEAGTAAVKTVEL-DAALGGRAVQYREVQGHETEKFLSYFKPCIIP 120
Query: 419 LDGGHASGFNHVTINAGAEKRLFQIKGKRNVRVKQVEPRASSLNKGDCFILDVDHQIYVF 598
+GG ASGF HV RLF +GK V VK+V SSLN D +ILD +I+ F
Sbjct: 121 QEGGVASGFKHVVAEEHI-TRLFVCRGKHVVHVKEVPFARSSLNHDDIYILDTKSKIFQF 179
Score = 57.2 bits (132), Expect = 8e-09
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 10/170 (5%)
Frame = +2
Query: 119 IEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEEDRLAWDIHFWIGSKTSQDEAGAA 298
+++WR+ + + FYSGD Y+ + E++ I W G ++ ++E G+A
Sbjct: 394 LQVWRVNGQAKTLLQAADHSKFYSGDCYVFQYSYPGEEKEEVLIGTWFGKQSVEEERGSA 453
Query: 299 AILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPAIRYLDGGHASGFNHVTINAGAEK 478
+ + E + Q R +G E QF Q I + GG +SG+ +
Sbjct: 454 VSMASKM-VESMKFVPAQARIYEGKEPIQFFVIMQSFIVF-KGGISSGYKKYIAEKEVDD 511
Query: 479 --------RLFQIKGK--RNVRVKQVEPRASSLNKGDCFILDVDHQIYVF 598
LF+I+G N++ QV+P A+SLN +IL D ++ +
Sbjct: 512 DTYNENGVALFRIQGSGPENMQAIQVDPVAASLNSSYYYILHNDSSVFTW 561
>At2g29890.1 68415.m03630 villin 1 (VLN1) nearly identical to villin
1 (VLN1) [Arabidopsis thaliana] GI:3415113
Length = 909
Score = 104 bits (249), Expect = 5e-23
Identities = 56/175 (32%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
Frame = +2
Query: 77 EVHPAFANSGKKCGIEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLST-TGEEDRLAWDIH 253
++ AF G K G+EIW + + + +++P + +G F+SG++Y+VL T + + +DIH
Sbjct: 7 DIDSAFQGVGTKSGLEIWCVYNKQLISIPKSSFGKFHSGNAYLVLRTFLRKIESPQYDIH 66
Query: 254 FWIGSKTSQDEAGAAAILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPAIRYLDGGH 433
+W+G ++ ++ A+ ++L D +Q+RE+QG E+++FL YF+P I ++G +
Sbjct: 67 YWLGIDANEVDSILASDKALDL-DAALGCCTVQYREVQGQETEKFLSYFKPCIIPVEGKY 125
Query: 434 ASGFNHVTINAGAEKRLFQIKGKRNVRVKQVEPRASSLNKGDCFILDVDHQIYVF 598
+ + L + KG VRVK+V SSLN D FILD ++++F
Sbjct: 126 SPKTG--IAGETYQVTLLRCKGDHVVRVKEVPFLRSSLNHDDVFILDTASKVFLF 178
Score = 41.1 bits (92), Expect = 5e-04
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Frame = +2
Query: 77 EVHPAFANSGKKCGIEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEEDRLAWDIHF 256
E P + N + +++WR++ + + ++GD Y+V ++R ++
Sbjct: 379 EDDPLYTNC--RDNLKVWRVDGDDVSLLSIPDQTKLFTGDCYLVQYKYTYKERTEHLLYV 436
Query: 257 WIGSKTSQDEAGAAAILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPAIRYLDGGHA 436
WIG ++ Q + A AI + +G ++ QG E +F FQ + + GG +
Sbjct: 437 WIGCESIQQDR-ADAITNASAIVGTTKGESVLCHIYQGNEPSRFFPMFQSLVVF-KGGLS 494
Query: 437 SGFNHVTI---NAGAE-----KRLFQIKG--KRNVRVKQVEPRASSLNKGDCFILDVDHQ 586
+ + G E LF++ G RN++ QV A+SLN +IL
Sbjct: 495 RRYKVLLAEKEKIGEEYNENKASLFRVVGTSPRNMQAIQVNLVATSLNSSYSYILQYGAS 554
Query: 587 IYVFV 601
+ ++
Sbjct: 555 AFTWI 559
>At1g16220.1 68414.m01942 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2C;
PP2C (GI:3643088) [Mesembryanthemum crystallinum];
contains Pfam PF00481 : Protein phosphatase 2C domain;
Length = 491
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 134 IEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEEDRLA-WDIHFWIGSKTSQDEAGAAAILT 310
++D+ ++VP +Y D YI+L+T G D L+ + + S S+D A A + T
Sbjct: 293 LKDYGLISVPDINYHRLTERDQYIILATDGVWDVLSNKEAVDIVASAPSRDTAARAVVDT 352
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 75 PRCIQPSRTPGKNAALKYGGSRISNPLRSLPRITAIST 188
PR + PSR+ G++ + G S + NP +L +T +ST
Sbjct: 45 PRPVSPSRSRGRSRSRSRGRSEVENPGTTL-YVTGLST 81
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 226 RGPSSLGHPLLD-RLQNEPGRSRRGRHLDSEP 318
RG S + L+D R QN+ GRSR G L P
Sbjct: 182 RGVSGMSSSLVDMRPQNQSGRSRLGNELSESP 213
>At1g20795.1 68414.m02604 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 418
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 211 KYYIGISRVEIAVMRGRDRN-GFEILDPPYFNAAFFPGVREGWMHLGHF 68
K + + + +M+ R+ I + PYF + + GVR G +H+ F
Sbjct: 13 KILFRLDPISLVMMKCTRRSFNSHISEDPYFKSKYLSGVRSGLLHISSF 61
>At5g07710.1 68418.m00884 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 468
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/105 (20%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
Frame = +2
Query: 98 NSGKKCGIEIWRIEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEEDRLAWDIHFWIGSKTS 277
++ +K ++ ++ PV P + N+ + +I G+E R A +IH
Sbjct: 358 SNAQKLSVDSGSTSEWNPVVNPMKGFVNYPNARIHIATEINGDEARYATEIH-------Q 410
Query: 278 QDEAGAA-AILTVNLDDEQFQGSAIQHREIQGYESKQFLDYFQPA 409
++ +GA ++ N ++E+ + + + S + DY Q A
Sbjct: 411 RESSGATQKLIFSNPNNEELESLLTTGSVVDAFLSLEPYDYQQKA 455
>At3g02750.1 68416.m00267 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2C;
PP2C (GI:3643088) [Mesembryanthemum crystallinum];
contains Pfam PF00481 : Protein phosphatase 2C domain;
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 134 IEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEEDRLA-WDIHFWIGSKTSQDEAGAAAI 304
++DF ++VP + D +IVL+T G D L+ D+ + S S+ A A +
Sbjct: 310 LKDFGLISVPDVSFRQLTEKDEFIVLATDGIWDVLSNEDVVAIVASAPSRSSAARALV 367
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +2
Query: 95 ANSGKKCGIEIWRIEDFEPVAVPTTHYGNFYS-------GDSYIVLSTTGEEDRLAWD 247
A++ C I +WR+ D PV+V H G + G Y +LS++ + WD
Sbjct: 303 ASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
>At5g36250.1 68418.m04373 protein phosphatase 2C, putative / PP2C,
putative
Length = 448
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 134 IEDFEPVAVPTTHYGNFYSGDSYIVLSTTGEEDRLAWDIHFWIGSKT-SQDEAGAAAI 304
++DF ++VP Y D ++VL+T G D L + I +K ++ AG A +
Sbjct: 301 LKDFGLISVPDVSYRRLTEKDEFVVLATDGIWDALTNEEVVKIVAKAPTRSSAGRALV 358
>At2g20000.1 68415.m02338 cell division cycle family protein / CDC
family protein low similarity to SP|P30260|CC27_HUMAN
Protein CDC27Hs (Cell division cycle protein 27 homolog)
Homo sapiens; contains Pfam profile PF00515: TPR Domain
Length = 744
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +2
Query: 53 IPNSIKMPEVHPAFANSGKKCGIEIWRIEDFE--------PVAVPTTHYGNFY 187
+ N ++ +++P FA + CG E +EDFE + V T HY +Y
Sbjct: 538 LKNFLRAVQLNPRFAYAHTLCGHEYTTLEDFENGMKSYQNALRVDTRHYNAWY 590
>At3g03190.1 68416.m00315 glutathione S-transferase, putative
identical to glutathione S-transferase GB:AAB09584 from
[Arabidopsis thaliana]
Length = 214
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 331 VPGIRYPAPRDTGLRV*TVSGLFPTSHSLPRWWSRFGLQPCHHK 462
+PG+RY +T L SGL + +L RWW+ +P K
Sbjct: 170 MPGMRY-IMNETSL-----SGLVTSRENLNRWWNEISARPAWKK 207
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 6 PCESVV*CRYRESSFIYQTQ*KCPRCIQPSR 98
PC VV CR S+ + KCP C+Q R
Sbjct: 345 PCGHVVCCRRCASTVERELNPKCPVCLQSIR 375
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,924
Number of Sequences: 28952
Number of extensions: 314010
Number of successful extensions: 819
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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