Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_G02
(584 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 31 0.51
04_02_0006 + 8455219-8457469,8457560-8457924 29 2.7
09_01_0066 - 978018-978500,978588-979034,979113-979412,979521-97... 28 4.8
05_04_0113 + 18085705-18085833,18086442-18086885 28 6.3
02_03_0247 - 16809742-16809780,16810070-16810298,16810381-168105... 28 6.3
12_02_0591 + 20864861-20867329 27 8.3
06_03_0143 + 17215975-17216745 27 8.3
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 27 8.3
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 31.5 bits (68), Expect = 0.51
Identities = 25/71 (35%), Positives = 32/71 (45%)
Frame = -3
Query: 363 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVP 184
+PG V +P P LSSA A AA S+ L S P A P +P P++P
Sbjct: 17 SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA------HPQARLPSPYPQIP 70
Query: 183 SELSVRAPCAS 151
S S A +S
Sbjct: 71 SSSSAAAAGSS 81
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = -3
Query: 396 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSL 223
F P +V+L N G+C ++ + P SS PA + LL+K I + +F +L
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALFSAL 492
>09_01_0066 -
978018-978500,978588-979034,979113-979412,979521-979855,
980325-980703
Length = 647
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = -3
Query: 351 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 178
C S L P ++ SA + P+ C L+ P F L A+G P PE
Sbjct: 467 CASTELAENPTSVDSAVDHITEPTSCTLIVRVMP----TFTVLAAEGLAYKPTPETRVHG 522
Query: 177 LSVRAPCASLR 145
+RA CA ++
Sbjct: 523 AQLRADCAKVQ 533
>05_04_0113 + 18085705-18085833,18086442-18086885
Length = 190
Score = 27.9 bits (59), Expect = 6.3
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Frame = +2
Query: 113 EEPELLTSSRVRRDAHGALTLNSD-------GTSGAGVKVPFAGNDKNIVSAIGSLDL-- 265
E+ TS+R R G LT+ ++ G GAG ++P AG D + G +
Sbjct: 30 EDSPAATSTRKRLVGSGKLTIVAEIPRLALGGGGGAGERLPAAGEDSAAATNTGKCQVVG 89
Query: 266 TNRQKLGAATAGVALD 313
++ + AA+AG+ D
Sbjct: 90 SSLAAMVAASAGIQPD 105
>02_03_0247 -
16809742-16809780,16810070-16810298,16810381-16810551,
16810630-16811516,16811604-16812050,16812129-16812836
Length = 826
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = -3
Query: 351 CVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSE- 178
C S L P ++ SA + P+ C L P F L A+G P PE
Sbjct: 365 CASTELAENPTSIDSAVDHITEPTSCTLTVRVMP----TFTVLAAEGLAYKPTPETTVHG 420
Query: 177 LSVRAPCASLR 145
+RA CA ++
Sbjct: 421 AQLRADCAKVQ 431
>12_02_0591 + 20864861-20867329
Length = 822
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 388 AGSCHLVSEPGDVCIRETY 332
AG CHL EPG V +R +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317
>06_03_0143 + 17215975-17216745
Length = 256
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 422 ITAKAFATRNMPDIAXVPNFNNCRWRE*TILFKDTIGASATAAQHG 559
+ A A ++P A +P N E ++LF + GAS+ AQ G
Sbjct: 11 LAVAAAAVHHLPPAASLPAMPNPASLEPSLLFPSSSGASSQPAQPG 56
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.5 bits (58), Expect = 8.3
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 324 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPE-VPSELSVRAPCASL 148
P T+S++T AV+ + + + + T LPA T APE +P+ S AP S
Sbjct: 310 PTTISTSTAAVSVSAETISSPVRPIVPTTTAAVLPASVTARSAPENIPAVTS--APANSS 367
Query: 147 RTLE 136
TL+
Sbjct: 368 STLK 371
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,506,092
Number of Sequences: 37544
Number of extensions: 359417
Number of successful extensions: 1133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -