Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_G01
         (406 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   2.6  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    25   3.4  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   4.5  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   5.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   5.9  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   5.9  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   5.9  

>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 206 PSLQWPRPRLWLKENNH 256
           PS++W  PR WLK   +
Sbjct: 192 PSVKWRMPRFWLKRRTN 208


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 6   LQQ*YSYCNVF-FLRFINIKHEFH*NYFVGCRLRLRYGDRFGGAVESLL 149
           LQ    +C +F  + F+N ++E   ++  G    +++G  FGGA  + L
Sbjct: 262 LQDYSEFCKLFNSVDFLNFEYEGDLSFSYGMGNSVKWGSIFGGAYANSL 310


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 93  CRLRLRYGDRFGGAVESLLGIGESWPENERRSHK 194
           C LRL+      G +E LL   +S  E +  SHK
Sbjct: 308 CSLRLKELQNSNGELEKLLEAAQSSFEEQLESHK 341


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 291 YKHEKIHKKVNE*LFSFSQSRGLGHCS 211
           Y H K  KKV E L + + SR +  CS
Sbjct: 214 YFHSKAEKKVTEFLRNRNWSRSITECS 240


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 293 YINMRKYIKKLMNDYF 246
           ++N+R YI+K MN+ F
Sbjct: 373 FLNLRSYIRKSMNNVF 388


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 177 HSLANFLQFLEGIPRRRRN-GPHSEDASDNQQNNF 76
           HS A+  +  E + RRR N G HS   SD+  N F
Sbjct: 470 HSEASISKDYEILKRRRSNSGVHSLTRSDSSFNGF 504


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 243 FSQSRGLGHCSDGWTST 193
           F  +  L HCSDGW  T
Sbjct: 333 FRHAHVLVHCSDGWDRT 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,606
Number of Sequences: 5004
Number of extensions: 27427
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)