Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F24
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    32   0.052
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual          29   0.49 
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   3.4  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   4.5  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   4.5  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   7.9  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   7.9  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 31.9 bits (69), Expect = 0.052
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 115 FLQRQSI*INRQSICDFNYKNEGFISCNRRYPGCLYACYRYTMSREPSKCILRMGDNAQS 294
           FLQ Q   I R ++C    KN   + C      C Y C++    +  +KCI +  D+A S
Sbjct: 408 FLQHQFYQIMRCALCGEFLKNAAGMQCI----DCHYTCHKKCYPKVVTKCISKSSDSASS 463


>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -2

Query: 368 GHPLPDIVRTRPPQFVFAR--ACCLYKDCALSPIRRIHLLGSRDIV*R 231
           GHP P  V T PP    +     C YK C     R IH   SR++  R
Sbjct: 231 GHPSPATVTTLPPFMSMSTIPIPCKYKPCLNPACRFIHPTKSRNMTWR 278


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +2

Query: 323 QTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYL 469
           +T  DA  + L +G H   D  NRP  AKL    +    +  + L DY+
Sbjct: 410 KTFYDAFSKNLKLGIH--EDAANRPALAKLLRYNSLNSPDDLISLEDYI 456


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 278 VTMHNPCKDSMHAQIQTEVD-ASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMK 454
           +T+ +P K+     ++T  + AS+Q +        ++ N P F     DAASEE EH   
Sbjct: 372 ITVTDPSKNLYERSVKTAAELASLQNVTETT--DNEIPNSPDF----LDAASEEDEHIPS 425

Query: 455 L 457
           L
Sbjct: 426 L 426


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 151 SICDFNYKNEGFISCNRRYPGCLYACYRY 237
           ++CD +  +   + CNR+YP C   C +Y
Sbjct: 54  TVCDVSSNSTFVVKCNRQYP-CT-RCLKY 80


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = -2

Query: 374 RNGHPLPDIVRTRPPQFVFARACCLYKDCALSPIRRIHLLG 252
           R GH L DI R   P ++      +   C      R+H  G
Sbjct: 866 RRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQG 906


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 365 HPLPDIVRTRPPQFVFARACCLYKDCALSPI 273
           HPL   +  R  Q +    C +Y  C+++PI
Sbjct: 298 HPLQLRILIRGLQLLKVGGCLVYSTCSINPI 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,304
Number of Sequences: 5004
Number of extensions: 39307
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)