Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F23
(391 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 129 7e-31
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 124 3e-29
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 122 8e-29
12_02_0993 + 25091074-25091169,25091681-25092047,25092132-25092316 29 0.99
01_03_0163 + 13346586-13347809 27 5.3
11_06_0256 - 21727919-21728366,21728463-21728512 27 7.0
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380... 27 7.0
04_04_0044 - 22333376-22333898,22335509-22336227 26 9.2
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 129 bits (312), Expect = 7e-31
Identities = 64/102 (62%), Positives = 77/102 (75%), Gaps = 3/102 (2%)
Frame = +2
Query: 74 ADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGINK 253
A K S K KSS++LDVKPWDDETDMK++E VR+++M+GL WGASKLVPVGYGI K
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKK 182
Query: 254 LQIMCVIEDDKVSVD-LLTDHI--QDIEDFVQSVDIAAFNTI 370
LQIM I DD VSVD L+ +H+ + I +FVQS DI AFN I
Sbjct: 183 LQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 124 bits (298), Expect = 3e-29
Identities = 62/105 (59%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Frame = +2
Query: 65 KAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYG 244
+A A K S K KSS++LDVKPWDDETDM ++E VR ++M+GLLWGASKLVPVGYG
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYG 200
Query: 245 INKLQIMCVIEDDKVSVDLLTD---HIQDIEDFVQSVDIAAFNTI 370
I KLQIM I DD VSVD L + + + +F+QS DI AFN I
Sbjct: 201 IKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 122 bits (295), Expect = 8e-29
Identities = 61/105 (58%), Positives = 75/105 (71%), Gaps = 3/105 (2%)
Frame = +2
Query: 65 KAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYG 244
+A A K S K KSS++LDVKPWDDETDM ++E VR ++M+GLLWGASKLVPVGYG
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYG 184
Query: 245 INKLQIMCVIEDDKVSVDLLTD---HIQDIEDFVQSVDIAAFNTI 370
I KLQIM I DD VSVD L + + + +++QS DI AFN I
Sbjct: 185 IKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229
>12_02_0993 + 25091074-25091169,25091681-25092047,25092132-25092316
Length = 215
Score = 29.5 bits (63), Expect = 0.99
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 328 FDVLNVVSKKVY*YFVIFNDTHNLKFVDAIANRDKL 221
F++ + V +KVY V+F DT NL+ A++NR +
Sbjct: 145 FELQHFVERKVYLDMVVFGDT-NLELPSALSNRSSV 179
>01_03_0163 + 13346586-13347809
Length = 407
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 137 PWDDETDMKEMENQVRTIEMDGLLWGA 217
PWDD + M + MDG LW A
Sbjct: 220 PWDDTFQPQVMRTGDHFVPMDGYLWQA 246
>11_06_0256 - 21727919-21728366,21728463-21728512
Length = 165
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 162 KKWKTKCAQLKWMAFYGEHQSLSL 233
KKWK+ AQ+KW H SL +
Sbjct: 33 KKWKSLLAQVKWWYNTNFHTSLGM 56
>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
3807118-3807282,3807363-3807657,3807739-3807953,
3808125-3808430,3808539-3808602,3808735-3808974,
3809150-3809253
Length = 1493
Score = 26.6 bits (56), Expect = 7.0
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 146 DETDMKEMENQVRTIEMDGLLW--GASKLVPVGYGINKLQIMCVIEDDKVSVDLLTDHI 316
DE KE+ IE +G W G +LV +G I K + V+++ SVD TD++
Sbjct: 1367 DEVRRKELRLDSPVIE-NGENWSVGQRQLVCLGRVILKRSKILVLDEATASVDTATDNL 1424
>04_04_0044 - 22333376-22333898,22335509-22336227
Length = 413
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 68 AYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGA 217
++A+ KKP+ +++ D W M+ +E + +E+DG WG+
Sbjct: 37 SHAEAMKKKPSGRGDAAVTGDGGGW-----MRRLEEEEAGLELDGSCWGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,287,340
Number of Sequences: 37544
Number of extensions: 164804
Number of successful extensions: 408
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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