Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F23
(391 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 4e-39
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05) 60 8e-10
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025) 50 7e-07
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064) 28 2.4
SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0) 28 3.1
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_23703| Best HMM Match : TTL (HMM E-Value=0) 26 9.5
SB_51790| Best HMM Match : TTL (HMM E-Value=0) 26 9.5
SB_35262| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 157 bits (380), Expect = 4e-39
Identities = 77/123 (62%), Positives = 88/123 (71%)
Frame = +2
Query: 2 LFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQV 181
LFGS LKAY +KK+KK +IAKS+I+LDVKPWDDETDM EME V
Sbjct: 103 LFGSDDEEEEKEAARIRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLV 162
Query: 182 RTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTDHIQDIEDFVQSVDIAAF 361
R+I+ DGLLWGASKLVP+ YGI KLQI V+EDDK+S D L + I EDFVQSVDIAAF
Sbjct: 163 RSIQADGLLWGASKLVPLAYGIKKLQITVVVEDDKISTDFLEEEICKFEDFVQSVDIAAF 222
Query: 362 NTI 370
N I
Sbjct: 223 NKI 225
>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
Length = 416
Score = 59.7 bits (138), Expect = 8e-10
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Frame = +2
Query: 62 LKAYADKKSKKPALIAKSS---IILDVKPWDDETDMKEMEN--QVRTIEMDGLLWGASKL 226
+KA+A K +KPA K +D+ DDE + +E + R E + +KL
Sbjct: 60 IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKK-ATTKL 118
Query: 227 VPVGYGINKLQIMCVIEDDKVSVDLLTDHIQDIEDF 334
V + YG+ KLQI CVIED KVS D L D + + EDF
Sbjct: 119 VEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 154
>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
Length = 301
Score = 50.0 bits (114), Expect = 7e-07
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = +2
Query: 221 KLVPVGYGINKLQIMCVIEDDKVSVDLLTDHIQDIEDF 334
KLV + YG+ KLQI CVIED KVS D L D + + EDF
Sbjct: 2 KLVEIAYGLKKLQITCVIEDAKVSTDDLIDKLCEFEDF 39
>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
Length = 197
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 62 LKAYADKKSKKPALIAKSSIILDVKPWDDETDMKE 166
LK AD KKP + +I D P D+E + KE
Sbjct: 76 LKPAADVTPKKPKKVKHKPVIADPVPVDEEEEPKE 110
>SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 729
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 131 VKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIE-DDKVSVDLLT 307
VK WDD ++ E++ + T + G+ A + + G+ I+ +IE K VD+LT
Sbjct: 559 VKWWDDRSECPEIQQESSTQSL-GIKNMAGVFIILMGGVGLSLILIIIEIKCKRLVDMLT 617
Query: 308 DHIQDIED 331
H Q +E+
Sbjct: 618 -HNQSLEE 624
>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2022
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 62 LKAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIE 193
L A D KS KPAL K + ++ E+ ++++EN+ R+IE
Sbjct: 1306 LDAGGDPKSSKPALQHKIQEEVGIRIVRLESALEKVENEKRSIE 1349
>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 27.5 bits (58), Expect = 4.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 128 DVKPWDDETDMKEMEN 175
DV+PWD TD+ E EN
Sbjct: 653 DVRPWDPLTDLVEYEN 668
>SB_23703| Best HMM Match : TTL (HMM E-Value=0)
Length = 657
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 65 KAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMD 199
K ++ + + KP I KS I K +E+DM++ T +MD
Sbjct: 364 KNHSLRSALKPLQIPKSKAIFQFKSQPEESDMEQSTASSCTEDMD 408
>SB_51790| Best HMM Match : TTL (HMM E-Value=0)
Length = 536
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 65 KAYADKKSKKPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMD 199
K ++ + + KP I KS I K +E+DM++ T +MD
Sbjct: 364 KNHSLRSALKPLQIPKSKAIFQFKSQPEESDMEQSTASSCTEDMD 408
>SB_35262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +2
Query: 221 KLVPVGYGINKLQIMC--VIEDDKV-SVDLLTDHIQDIEDFVQSVDIAAFNTIYLSMAII 391
K++ +G G+N L+ +C V+ D+ V V L D + D+E+ + +N + L + ++
Sbjct: 149 KVIKLGDGVNDLEELCLLVVYDEVVLKVIKLGDGVNDLEELCL---LVVYNQVVLKVIML 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,766,609
Number of Sequences: 59808
Number of extensions: 195616
Number of successful extensions: 422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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