Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F22
(260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 27 0.54
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 26 0.72
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 1.7
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 1.7
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 25 2.2
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 24 2.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 24 3.8
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 23 6.7
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 23 6.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 23 6.7
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 23 6.7
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 23 8.8
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 23 8.8
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 23 8.8
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce... 23 8.8
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 23 8.8
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 23 8.8
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 0.54
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 60 NHKNIHDIHKKNMVFTSSRISNESTSPTAFGLSLV 164
NH ++D+ KK ++ N TSP F LV
Sbjct: 172 NHPKLYDLTKKQLISKMDSSYNYDTSPLEFNSWLV 206
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.2 bits (55), Expect = 0.72
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Frame = -2
Query: 208 ERDIEQLQRWYEDLLTKL----RPNAVGLVDSFD--IRDEVNTMFFLC 83
E+D EQL+ W ++ L P G D D +++ N +FF C
Sbjct: 322 EKDCEQLKEWLDEALHSFIVVQGPRGSGKRDLVDRVVKERKNVLFFDC 369
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.0 bits (52), Expect = 1.7
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 220 TSISERDIEQLQRWYEDLLTKLRPN 146
T++ + LQ+W+ ++LTK+ P+
Sbjct: 442 TTLIITPVSLLQQWHNEILTKIAPS 466
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 108 SSRISNESTSP--TAFGLSLVSKSSYQRCSCSMSRSDIDVN 224
S + ++ + P + G SL K S R SMSR+++DV+
Sbjct: 123 SDSLKHQKSHPMLNSLGSSLSLKKSVSRPPSSMSRTNLDVS 163
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 2.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 93 FFYVCHGYFYGLFN 52
FF+ CHG Y LF+
Sbjct: 415 FFHCCHGQSYNLFH 428
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 24.2 bits (50), Expect = 2.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = -2
Query: 247 NNCIQLWQFTSISERDIEQLQRWY--EDLLT---KLRPNAVGLVD 128
+ CI +W F + ++ I + R Y +D+LT L N + VD
Sbjct: 125 SGCIDMWMFLANVQKAISSVTRSYSNDDILTDEGALNENYLNTVD 169
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 23.8 bits (49), Expect = 3.8
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 84 HKKNMVFTSSRISNESTSPTAFGLSLVSKSSYQRC-SCSMSRSDIDVN 224
+K + + S S P ++GLS +SK + Q S S DV+
Sbjct: 78 NKNSDKYNGSLGDKGSFDPNSYGLSAISKQATQEALSISQGNDSYDVS 125
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 84 HKKNMVFTSSRISNESTSPTAFGL 155
H + +VF ++ STSP FGL
Sbjct: 365 HIEKVVFDLKYVTEFSTSPNDFGL 388
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -2
Query: 238 IQLWQFTSISERDIEQLQRWYEDLLTK 158
+QLW SE + YED++T+
Sbjct: 328 LQLWDSLFYSEEQRKSFTPMYEDIITE 354
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 23.0 bits (47), Expect = 6.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 239 YSIMAVYIDIGTRH*TAAALVRRLAH*TEAERGGARRLV 123
YS MA+ + H ALVR L + E RGG R ++
Sbjct: 267 YSEMAMCYPLMQGHQPEWALVRGLNYEREMMRGGRRGIL 305
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 116 YIERVDEPHRVRPQFSEQVFVPTLQLFNVAFRYRCKL 226
Y+ R+D R+ FS ++ + L N+A R +L
Sbjct: 196 YLSRLDNDRRLADHFSGKMHLGYAMLRNIARDLRAQL 232
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 22.6 bits (46), Expect = 8.8
Identities = 12/49 (24%), Positives = 21/49 (42%)
Frame = +3
Query: 81 IHKKNMVFTSSRISNESTSPTAFGLSLVSKSSYQRCSCSMSRSDIDVNC 227
I+ + + + R+ + + T FG S V+ + R I VNC
Sbjct: 842 INVQKYIRNAKRLDRSALASTVFGTSEVNALTLTSRKGQSVRGTISVNC 890
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 22.6 bits (46), Expect = 8.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 214 ISERDIEQLQRWYEDLLTKLRPNAVGLVDSFDIRD 110
++E ++ QR+ + LLT L NA +SF++ D
Sbjct: 358 LNENMLDYFQRYNQKLLTVLSSNA----ESFNVSD 388
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -2
Query: 124 FDIRDEVNTMFFLCMSWIFLW 62
+DI + T +F + WI LW
Sbjct: 110 YDIMHDRGTPYFPFLCWICLW 130
>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 213
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 77 MDIFMVYLIM*LHCILIMTSWY 12
+DIF +L++ +HCIL Y
Sbjct: 13 IDIFGEFLLVSIHCILYARRLY 34
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 234 NYGSLHRYRNATLNSC 187
NY ++ +RNATL+ C
Sbjct: 10 NYIDINFFRNATLDQC 25
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -2
Query: 214 ISERDIEQLQRWYEDLLTKLRPNAVGLVDSFDIRDEVNTMF 92
+++++++ R YE L ++ N + +I DEV T F
Sbjct: 58 LAQKELDLKIREYEQKLKDVKLNDINKKSPLNIPDEVWTKF 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,062,884
Number of Sequences: 5004
Number of extensions: 18776
Number of successful extensions: 50
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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