Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_F22
(260 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 28 0.90
07_03_1749 + 29201116-29201193,29201294-29201371,29201442-292015... 27 2.1
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 27 2.1
01_01_0576 - 4280527-4280572,4282109-4282356 27 2.1
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 27 2.7
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 26 3.6
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147... 26 4.8
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 25 6.3
06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667... 25 8.4
05_05_0030 - 21698625-21698752,21699589-21699627,21699708-216998... 25 8.4
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 25 8.4
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466... 25 8.4
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 28.3 bits (60), Expect = 0.90
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 90 KNMVFTSSRISNESTSPTAFGLSLVSKSSYQRCSCSMSRSDIDVNC 227
K M S + E T P+ L L+ + +RCSC+ R D+NC
Sbjct: 958 KKMKLESMQKIIEMTVPSLEELMLIDMPNLERCSCTSMR---DLNC 1000
>07_03_1749 +
29201116-29201193,29201294-29201371,29201442-29201540,
29202958-29203020,29203101-29203298,29203359-29203472,
29203744-29203806,29203912-29204208,29204774-29204935,
29205061-29205244,29205771-29205820
Length = 461
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 87 YVCHGYFYGLFNNVITLYFN 28
YVC Y YG N + T++F+
Sbjct: 247 YVCQRYPYGTINGLFTIFFD 266
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 169 LLTKLRPNAVGLVDSFDIRD 110
L ++RPNAV LVD+F+ D
Sbjct: 597 LYAQVRPNAVALVDAFNYTD 616
>01_01_0576 - 4280527-4280572,4282109-4282356
Length = 97
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 138 PTAFGLSLVSKSSYQRCSCSMSR 206
P AF +S S S + CSCS SR
Sbjct: 62 PVAFKVSAPSTSESESCSCSCSR 84
>01_05_0495 +
22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 214 ISERDIEQLQRWYEDLLTKLRPNAVGLVDSFDIRDEVNT 98
I + ++ L W ++ LT + L+DS +R+E+ T
Sbjct: 646 IQSKALDCLLNWKDEFLTPYSKSLKNLIDSKTLREELTT 684
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 66 KNI-HDIHKKNMVFTSSRISNESTSPTAFGLSLVSKSSYQRCSCSMSRSD 212
KN+ HD+HK N++ I N+ T + + ++Y + S ++ SD
Sbjct: 547 KNVTHDLHKSNVLERPKVIYNDRTGKYVMWMH-IDDTNYTKASVGVAISD 595
>05_06_0096 +
25513535-25514024,25514139-25514236,25514395-25514783,
25515485-25515599,25515816-25515917,25516584-25516734,
25517162-25517250,25517518-25517566,25517723-25517763,
25517929-25518116,25518285-25518402,25518900-25519079,
25519172-25519294,25519368-25519455,25519549-25519679,
25519768-25519866,25520822-25521253
Length = 960
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 129 TRSIYVTR*IPCFF--YVCHGYFYGLFNNVITLYFNY 25
TR++ R IP F + H Y+ G NN++ F+Y
Sbjct: 190 TRALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHY 226
>10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = +3
Query: 57 INHKNIHDIHKKNMVFTSSRISNESTSPTAFGL---SLVSKSSYQR 185
I KN+HD+ + F S STS + + L S YQR
Sbjct: 966 IRRKNLHDLESLKVFFGDSAAGEASTSSYSLVIIFDRLASTPEYQR 1011
>06_02_0132 -
12166009-12166089,12166197-12166321,12166489-12166710,
12168194-12168260,12168424-12168741
Length = 270
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 208 ERDIEQLQRWYEDLLTKLRPNAVGLVDSFDIR 113
+++ E L+RW E LL + N+VG D+R
Sbjct: 105 DKEDESLRRWKEQLLGSVDLNSVGESLEPDVR 136
>05_05_0030 - 21698625-21698752,21699589-21699627,21699708-21699822,
21699927-21699992,21701064-21701203,21701424-21701473,
21701608-21702045,21702757-21702839,21702941-21702977,
21703366-21703457,21703531-21703615,21703950-21704029,
21704049-21704105,21704350-21704747,21706322-21707223,
21707331-21707421,21708123-21710273,21710375-21710813,
21711180-21711299
Length = 1836
Score = 25.0 bits (52), Expect = 8.4
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 66 KNIHDIHKKNMVFTSSRISNESTSPTAFGLSLVSKSSYQRCSCSMSRSDIDVN--CHN 233
KN+H + ++ VF S ++ TSP A ++ + + C + + N CHN
Sbjct: 1647 KNVHRLRTEHYVFCSQLRTSRFTSPHATDELKDTREAPKPCCNPQTEGGLCSNEMCHN 1704
>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 196 EQLQRWYEDLLTKLRPNAVGLVDSFDI 116
++L+ W E+L T + +G++D F +
Sbjct: 1153 QKLELWEENLSTAVSLEVLGIIDKFSV 1179
>01_07_0374 +
43144861-43144998,43145695-43145794,43146499-43146651,
43147383-43150081
Length = 1029
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = -2
Query: 238 IQLWQFTSISERDIEQLQRWYEDLLTKLRPNA 143
++ W S S + +++ QR +++L+ +L+P A
Sbjct: 811 LEFWMKFSSSLQRVQEFQRKHDELMQQLQPAA 842
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,534,509
Number of Sequences: 37544
Number of extensions: 108233
Number of successful extensions: 274
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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