Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F22
         (260 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_28627| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)              27   3.2  
SB_9022| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.2  
SB_27285| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_199| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   5.5  
SB_51868| Best HMM Match : GIY-YIG (HMM E-Value=5.7)                   25   7.3  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    25   7.3  
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       25   7.3  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               25   7.3  
SB_14129| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_12778| Best HMM Match : GIY-YIG (HMM E-Value=4.7)                   25   7.3  
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)                    25   7.3  
SB_3833| Best HMM Match : Borrelia_orfA (HMM E-Value=1.2)              25   7.3  
SB_50895| Best HMM Match : GIY-YIG (HMM E-Value=4.3)                   25   9.7  
SB_40797| Best HMM Match : HEAT (HMM E-Value=5.5e-05)                  25   9.7  
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)                     25   9.7  
SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)         25   9.7  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               25   9.7  
SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.7  

>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 29   LKYSVITLLNKP*KYP*HT*KKHGIYLVTYIERVDEPHRVRPQFSEQ 169
            L+  V+  LN+P K      +++G+Y  TY    D PHRV   +  +
Sbjct: 1220 LEVKVVDDLNQPVKCDIEE-EEYGMYACTYTPEKDVPHRVNVTYGSK 1265


>SB_28627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 60  NHKNIHDIHKKNMVFTSSRISNESTSPTAFGLSLVSKSSYQRCSCSMSRS-DIDVNC 227
           N K I D H K ++  SS     S++PT         ++Y+ C+C    +  +D NC
Sbjct: 107 NTKQIIDNHNKRIITASSATEIASSAPTT--------TNYKTCNCRQKDTCPLDGNC 155


>SB_16870| Best HMM Match : Methyltransf_3 (HMM E-Value=1)
          Length = 766

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -2

Query: 211 SERDIEQLQRWYEDLLTKLRPNAVGLVDSFDIRDEV-NTM 95
           S + ++++Q+  EDL+  L+P+  G    F++ D++ NT+
Sbjct: 572 SVKGLDRIQKTVEDLVRFLQPSDAGQKQLFELTDKLCNTL 611


>SB_9022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 612

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 156 SLVSKSSYQRCSCSMSRSDIDVNC 227
           +L  KS+ +RC+   + SD+ +NC
Sbjct: 274 TLTGKSAVRRCTAKKTWSDLPINC 297


>SB_27285| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 157 LRPNAVGLVDSFDIRDEV 104
           +RP+AV LVD+FD  D V
Sbjct: 104 IRPDAVALVDAFDYSDFV 121


>SB_199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 183 RCSCSMSRSDIDVNCHN 233
           RC   MS+ D+   CHN
Sbjct: 35  RCHAKMSQQDVTARCHN 51



 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 183 RCSCSMSRSDIDVNCH 230
           RC   MSR D+   CH
Sbjct: 22  RCHAKMSRQDVTTRCH 37


>SB_51868| Best HMM Match : GIY-YIG (HMM E-Value=5.7)
          Length = 256

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 27  N*NTV*LHY*I--NHKNIHDIHKKNMVFTSSRISNESTSPT 143
           N NT+ + Y    N K I D H K ++  SS     S++PT
Sbjct: 81  NRNTIKISYSCMNNTKQIIDNHNKRIITASSATETASSAPT 121


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 102 IPCFFYVCHGYFYGLFNNVITL 37
           + C F +CH Y  G++N  +T+
Sbjct: 313 VKCEFLLCHQYPIGVYNEEMTI 334


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 27   N*NTV*LHY*I--NHKNIHDIHKKNMVFTSSRISNESTSPT 143
            N NT+ + Y    N K I D H K ++  SS     S++PT
Sbjct: 886  NRNTIKISYSCMNNTKQIIDNHNKRIITASSTTETASSAPT 926


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 80  HT*KKHGIYLVTYIERVDEPHRVRP 154
           HT K H I L T   R  +PH  +P
Sbjct: 22  HTTKPHNIKLYTTKPRTTKPHTTKP 46


>SB_14129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 27  N*NTV*LHY*I--NHKNIHDIHKKNMVFTSSRISNESTSPT 143
           N NT+ + Y    N K I D H K ++  SS    +S++PT
Sbjct: 108 NRNTIKISYSCMNNTKQIIDNHNKRIITASSATEIDSSAPT 148


>SB_12778| Best HMM Match : GIY-YIG (HMM E-Value=4.7)
          Length = 224

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 27  N*NTV*LHY*I--NHKNIHDIHKKNMVFTSSRISNESTSPT 143
           N NT+ + Y    N K I D H K ++  SS     S++PT
Sbjct: 68  NRNTIKISYSCMNNTKQIIDNHNKRIITASSATETASSAPT 108


>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
          Length = 978

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 27   N*NTV*LHY*I--NHKNIHDIHKKNMVFTSSRISNESTSPT 143
            N NT+ + Y    N K I D H K ++  SS     S++PT
Sbjct: 922  NRNTIKISYSCMNNTKQIIDNHNKRIITASSATETASSAPT 962


>SB_3833| Best HMM Match : Borrelia_orfA (HMM E-Value=1.2)
          Length = 594

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 27  N*NTV*LHY*I--NHKNIHDIHKKNMVFTSSRISNESTSPT 143
           N NT+ + Y    N K I D H K ++  SS     S++PT
Sbjct: 208 NRNTIKISYSCMNNTKQIIDNHNKRIITASSATETASSAPT 248


>SB_50895| Best HMM Match : GIY-YIG (HMM E-Value=4.3)
          Length = 218

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +3

Query: 27  N*NTV*LHY*I--NHKNIHDIHKKNMVFTSSRISNESTSPTAFGLSLVSKSSYQRCSCSM 200
           N NT+ + Y    N K I D H K ++ TS      S++PT         ++ + C+C  
Sbjct: 31  NRNTIKISYSCMNNTKQIIDNHNKRIITTSPATEIASSAPTT--------TNNKTCNCRQ 82

Query: 201 SRS-DIDVNC 227
             +  +D NC
Sbjct: 83  KETCPLDGNC 92


>SB_40797| Best HMM Match : HEAT (HMM E-Value=5.5e-05)
          Length = 83

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 172 DLLTKLRPNAVGLVDSFDIRDEVNTMFFLCM 80
           DLL+ L       ++ F IR  + T+ F CM
Sbjct: 22  DLLSGLAEGLEDQIEQFVIRSNIMTLLFQCM 52


>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 834

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 65  MVYLIM*LHCILIMTSWY 12
           MVY +  LH  +++T+WY
Sbjct: 766 MVYFLGSLHVTMVLTNWY 783


>SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)
          Length = 1652

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 226 QFTSISERDIEQLQRWYEDLLTKLRPNAVGLV--DSFD 119
           QFT I+E D E L R + + + +++PN       DSFD
Sbjct: 355 QFTCINEPDEEGLLRRFFEHILEVKPNIFVTYNGDSFD 392


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 117 ISNESTSPTAFGLSLVSKSSYQRCSCSMSRSDID 218
           +  E TS   +G  LVS+ +    +C   + DID
Sbjct: 348 VEKEVTSCVQYGRGLVSEGTLDAHACDKVKDDID 381


>SB_6242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 172 DLLTKLRPNAVGLVDSFDIRDEV 104
           DL  ++ P A+ L DSF + DE+
Sbjct: 636 DLCREVAPQALALCDSFGLTDEM 658


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,729,522
Number of Sequences: 59808
Number of extensions: 133208
Number of successful extensions: 435
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 16,821,457
effective HSP length: 63
effective length of database: 13,053,553
effective search space used: 300231719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)