Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F20
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   4.3  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    24   7.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   10.0 
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    24   10.0 

>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 109 LELISTVLYTIMIRIKDSLYSYLRR 35
           ++ +   LY ++ R K S+Y+YLRR
Sbjct: 224 MKTLYNCLYELIDRDKKSIYNYLRR 248


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 245 YEDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGN 361
           YE  PE + N   +R A AL  NS+   G+   V    N
Sbjct: 227 YEQDPEGFVNPYSKRGAAALA-NSENNKGSEAGVSAKTN 264


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 272  NSRVRRQAGALTINSDGTSGAMVKVPITGNENH-KLSALGS 391
            NS V +  G+ + +S  T      +PI   ENH  L++ GS
Sbjct: 1439 NSPVTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGS 1479


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 283 HPRVSPLLRLILILFDVVTRLFNKH 209
           H RV P L+   +L D +T  +N H
Sbjct: 255 HKRVIPFLQKPNLLMDFLTDAYNSH 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,828
Number of Sequences: 5004
Number of extensions: 24175
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)