Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F20
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0256 + 21331396-21332268                                         32   0.15 
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   1.4  
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717...    26   9.5  
02_02_0412 - 9950286-9950380,9950530-9951203,9951402-9951580,995...    26   9.5  

>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = -2

Query: 337 HSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQENR 176
           HS    I + S + RL AHP   P +RLIL+  D +  LF     A  AD + R
Sbjct: 129 HSPSDLISLLSRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180


>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 185  LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKV 346
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L I+ + + G+  +V
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935


>07_01_0863 +
           7177443-7177471,7178300-7178399,7178628-7178899,
           7179143-7179794,7179886-7180085,7180317-7180417,
           7180559-7181697
          Length = 830

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = -2

Query: 376 ELVVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAV 197
           E +++  S+G  D+  GG++R    S+     P   P  +   I   +V RL  +   A+
Sbjct: 131 EYILYWCSFGPDDYRKGGSVRPSRNSSTKRKTPAGRPHTKRGCICHFIVKRLIAEPSVAL 190

Query: 196 DADQENRH*EQLSE 155
                ++H +++ +
Sbjct: 191 VIYNHDKHVDKIGK 204


>02_02_0412 -
           9950286-9950380,9950530-9951203,9951402-9951580,
           9952578-9952633,9953233-9953262,9953820-9953982
          Length = 398

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 228 VTTSNSMRISRSSGLTRGCAGKRVLSLSTLMV 323
           VT S  + + R   +  GC  KRVL+L+  +V
Sbjct: 290 VTQSKELLMPRFDKILSGCTAKRVLTLAKQLV 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,339,600
Number of Sequences: 37544
Number of extensions: 155394
Number of successful extensions: 364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)