Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_F20
         (398 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    30   0.60 
SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              28   2.4  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)                     26   9.8  
SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)                     26   9.8  

>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -2

Query: 325 GTIRVDSESTRL---PAHPRVSPLLRLILILFD---VVTRLFNKHVTAV 197
           G + V+ +  RL     HPR SPLL+L+    D   VV  LF +HV AV
Sbjct: 614 GKVAVEEKRPRLLRSEFHPRRSPLLQLLSNTPDVHVVVVELFQRHVHAV 662


>SB_19293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 66   ILIIIVYKTVEINSKHHLRLDSPQANIRR 152
            IL  +VY T+ IN+K+ L L SP   +RR
Sbjct: 937  ILFAVVYMTI-INAKYALNLSSPHPGLRR 964


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 352  YGYLDHSTGGTIRVDSESTRLPAHPRVSPL 263
            Y YL H T  T + DS STR+    RV  L
Sbjct: 935  YAYLHHDTRTTCKYDSYSTRIYTATRVRQL 964


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 394 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 299
           D +K+ E +  IA++  L+H+  G I  DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831


>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 212 LVEEPGYYIEQYEDQPEQW 268
           L EEPGYYIE  +  PE W
Sbjct: 210 LDEEPGYYIE--KKAPESW 226


>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
          Length = 1691

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/56 (21%), Positives = 31/56 (55%)
 Frame = -2

Query: 238 DVVTRLFNKHVTAVDADQENRH*EQLSEHLRMFA*GLSSLK*CLELISTVLYTIMI 71
           D + R+F++H   +D  + N   E   +HLR+   G +S+    +++ ++++ + +
Sbjct: 207 DEIRRIFHEHEVDMDKFKRNSWQESRRQHLRVI--GGTSVSLDRQIVGSIIHKLFV 260


>SB_5763| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 674

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 152 MFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPE 262
           + + L  V V +  VN    +   PGY IE +E+ PE
Sbjct: 210 LVSDLLKVVVQVEDVNDNPPVFSMPGYTIEYWEESPE 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,809,567
Number of Sequences: 59808
Number of extensions: 179807
Number of successful extensions: 402
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)